Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 78223039

GI number: 78223039

Start: 2046113

End: 2047684

Strand: Reverse

Name: ompA [H]

Synonym: Gmet_1832

Alternate gene names: 78223039

Gene position: 2047684-2046113 (Counterclockwise)

Preceding gene: 78223040

Following gene: 78223038

Centisome position: 51.23

GC content: 55.6

Gene sequence:

>1572_bases
ATGACAAGACTTTGTGTTTTTATCATAGCGGCCCTTGTCTTTGCCGCATCGGCCTTTGCCAACCCCGCCATGAACGGCTC
GACGGGCCTCATCACGGTGCCTTCGGCCGAAACGCTCGACGCAGGGAATATCTGCGTGGGGGCTTGGGGAATCAGCACGG
CGAAGAACAGCGACAACGCACTGACTGTTCCTGTTGCTCTTACCCTCGGCATTGGTACTTTCTGGGAACTCTACGGCTCA
TATCCGAACCTTCTTTTTAACGGCGACGAGGAGAAGGCGGGGCAAGGGTACGCCGAACTGGGGTCAAAGCTCAGGGTAAT
TGGGAAGCGGAGTTCACCCTTTAAGCTGGCGCTTGATCTGTTCCTTCAGCGCCAGATATCAGAGGACGCAGCTGTAGACG
GTACCACAAATGGTGGTGGGAAGGTCATCGCTTCCTACACCACGGACCGGTTCGGGGTCCATGCCTATTCCGGGTACCTG
CTGGCTGGCTCTCCTGAGGGCAAAAATTTCGATAATGAGATTCTTTACGGCGTGGGCATAGAGTATTCACCGGCGCTCCG
AATGAGAGTCACTGGCGAACTTACCGGTAACACCAGCCGTGATCCAGCCCTTGCGGATTCATTGGAGGGACTGGTTGGTT
TCCAGTACTATCTCTCCCCCCATCTTACTCTCAACTTGGCCGGCAGTATCGGTTTTGCCGATGGCAGCCCCGATTGGCGT
GCGATTTTCGGCCTGACTGCCTGTCAGGGGGTCGGCAGCTACGTTAAGCCGGTGCCACGACTTGGACAGGGACTGGACCC
TCTTGATGAACAAAAAAAGAAGGAACCAGTCAAAATCCGCAAGATTATCCCCATTTCCTCGCTTCTTGTCAGCTCCCTTG
CACCTCAGGCGCCGGCCAACAAGCTTGAGGTTACGGTTGAGCCCGGTAAGGAGGAGATCACCATCAAGCCCTACGGTCAA
GTGACTATTTCGGCTCAACCTGCTGCAGCCAAGGCCGTTTCTTCCGCCACCCTTGAAGAGGTTTCCCTGACTCAGGGAGG
GGAAGAAGTCCGGCTGGCGTCACGGGTTTCGGGGACTCTGGAAAACTCCGCCCTTGAGTATACCCTTGCCCGTCTCGAAG
GGATCACTCCTCTCTACAGTGTCGATGTGAAGGGGCAGAACGTTCAGGTTGCCTCGGCCCGTGATGGGGATATTGCCGAC
AGCATGAAGGTCTATCGAAAATTTCGCTTCCCGGACGTCACCTTCGACTTTGACCAGTGGAGTCTCTCGGCGGAGGGAAA
GAAGTCCATCTCCGAGGTTGCAGAGCTGGTCCGAAAGGACACGAAGTGGGTTTATCTCAGGGTTGACGGCTATACCGACA
ATATTGGCTCGACCGACTACAACATGGATCTTTCCCTCAAGCGCGCCGTTTCCGTGGCCAGCTACCTCGTTGCACGGGAG
GGAATTGATGCGGCCAAGATCTTCATCAAGGGGCTCGGCAAGTCCAAGCCGCTGGCAGACAATGCAACTTCTGACGGGAG
AAAGTTGAATCGCCGGTGCGAGATTCTCTTCCTTATCCCCAAGGAAAGCTGA

Upstream 100 bases:

>100_bases
GCTCTGTCGGAAGTTCAGCAGCCGTTGACAAAAAATTGTCTCTGTTCGAAACCCCTTTGGTGTCGTCGGACCCACCAGGT
ACGCAAGGCGCTAACTCTTC

Downstream 100 bases:

>100_bases
TGAAATCGGCTGTTCCTCTCCTTCTTCTCTCGGCATTACTGATCTCTATTCCTGTCTCTGTCTATCCCCAGGCATCGTCA
ATTCAGGAAGAAGAGATCGG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 522

Protein sequence:

>523_residues
MTRLCVFIIAALVFAASAFANPAMNGSTGLITVPSAETLDAGNICVGAWGISTAKNSDNALTVPVALTLGIGTFWELYGS
YPNLLFNGDEEKAGQGYAELGSKLRVIGKRSSPFKLALDLFLQRQISEDAAVDGTTNGGGKVIASYTTDRFGVHAYSGYL
LAGSPEGKNFDNEILYGVGIEYSPALRMRVTGELTGNTSRDPALADSLEGLVGFQYYLSPHLTLNLAGSIGFADGSPDWR
AIFGLTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPANKLEVTVEPGKEEITIKPYGQ
VTISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTLENSALEYTLARLEGITPLYSVDVKGQNVQVASARDGDIAD
SMKVYRKFRFPDVTFDFDQWSLSAEGKKSISEVAELVRKDTKWVYLRVDGYTDNIGSTDYNMDLSLKRAVSVASYLVARE
GIDAAKIFIKGLGKSKPLADNATSDGRKLNRRCEILFLIPKES

Sequences:

>Translated_523_residues
MTRLCVFIIAALVFAASAFANPAMNGSTGLITVPSAETLDAGNICVGAWGISTAKNSDNALTVPVALTLGIGTFWELYGS
YPNLLFNGDEEKAGQGYAELGSKLRVIGKRSSPFKLALDLFLQRQISEDAAVDGTTNGGGKVIASYTTDRFGVHAYSGYL
LAGSPEGKNFDNEILYGVGIEYSPALRMRVTGELTGNTSRDPALADSLEGLVGFQYYLSPHLTLNLAGSIGFADGSPDWR
AIFGLTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPANKLEVTVEPGKEEITIKPYGQ
VTISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTLENSALEYTLARLEGITPLYSVDVKGQNVQVASARDGDIAD
SMKVYRKFRFPDVTFDFDQWSLSAEGKKSISEVAELVRKDTKWVYLRVDGYTDNIGSTDYNMDLSLKRAVSVASYLVARE
GIDAAKIFIKGLGKSKPLADNATSDGRKLNRRCEILFLIPKES
>Mature_522_residues
TRLCVFIIAALVFAASAFANPAMNGSTGLITVPSAETLDAGNICVGAWGISTAKNSDNALTVPVALTLGIGTFWELYGSY
PNLLFNGDEEKAGQGYAELGSKLRVIGKRSSPFKLALDLFLQRQISEDAAVDGTTNGGGKVIASYTTDRFGVHAYSGYLL
AGSPEGKNFDNEILYGVGIEYSPALRMRVTGELTGNTSRDPALADSLEGLVGFQYYLSPHLTLNLAGSIGFADGSPDWRA
IFGLTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPANKLEVTVEPGKEEITIKPYGQV
TISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTLENSALEYTLARLEGITPLYSVDVKGQNVQVASARDGDIADS
MKVYRKFRFPDVTFDFDQWSLSAEGKKSISEVAELVRKDTKWVYLRVDGYTDNIGSTDYNMDLSLKRAVSVASYLVAREG
IDAAKIFIKGLGKSKPLADNATSDGRKLNRRCEILFLIPKES

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=137, Percent_Identity=38.6861313868613, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788957, Length=108, Percent_Identity=35.1851851851852, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787191, Length=114, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 56040; Mature: 55909

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLCVFIIAALVFAASAFANPAMNGSTGLITVPSAETLDAGNICVGAWGISTAKNSDNA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCE
LTVPVALTLGIGTFWELYGSYPNLLFNGDEEKAGQGYAELGSKLRVIGKRSSPFKLALDL
EEEEEEEEECHHHHHHHHCCCCCEEECCCHHHHCCCHHHHCCEEEEEECCCCCHHHHHHH
FLQRQISEDAAVDGTTNGGGKVIASYTTDRFGVHAYSGYLLAGSPEGKNFDNEILYGVGI
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCEEEEECC
EYSPALRMRVTGELTGNTSRDPALADSLEGLVGFQYYLSPHLTLNLAGSIGFADGSPDWR
CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEECCCEEEEEECEEECCCCCCCHH
AIFGLTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPAN
EEEHHHHHHHCCHHHCCHHHHCCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCC
KLEVTVEPGKEEITIKPYGQVTISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTL
CEEEEECCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCH
ENSALEYTLARLEGITPLYSVDVKGQNVQVASARDGDIADSMKVYRKFRFPDVTFDFDQW
HHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCC
SLSAEGKKSISEVAELVRKDTKWVYLRVDGYTDNIGSTDYNMDLSLKRAVSVASYLVARE
EECCCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
GIDAAKIFIKGLGKSKPLADNATSDGRKLNRRCEILFLIPKES
CCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEECCC
>Mature Secondary Structure 
TRLCVFIIAALVFAASAFANPAMNGSTGLITVPSAETLDAGNICVGAWGISTAKNSDNA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCE
LTVPVALTLGIGTFWELYGSYPNLLFNGDEEKAGQGYAELGSKLRVIGKRSSPFKLALDL
EEEEEEEEECHHHHHHHHCCCCCEEECCCHHHHCCCHHHHCCEEEEEECCCCCHHHHHHH
FLQRQISEDAAVDGTTNGGGKVIASYTTDRFGVHAYSGYLLAGSPEGKNFDNEILYGVGI
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCEEEEECC
EYSPALRMRVTGELTGNTSRDPALADSLEGLVGFQYYLSPHLTLNLAGSIGFADGSPDWR
CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEECCCEEEEEECEEECCCCCCCHH
AIFGLTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPAN
EEEHHHHHHHCCHHHCCHHHHCCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCC
KLEVTVEPGKEEITIKPYGQVTISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTL
CEEEEECCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCH
ENSALEYTLARLEGITPLYSVDVKGQNVQVASARDGDIADSMKVYRKFRFPDVTFDFDQW
HHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCC
SLSAEGKKSISEVAELVRKDTKWVYLRVDGYTDNIGSTDYNMDLSLKRAVSVASYLVARE
EECCCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
GIDAAKIFIKGLGKSKPLADNATSDGRKLNRRCEILFLIPKES
CCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]