Click here to switch to the map view.

The map label for this gene is nusB

Identifier: 78222837

GI number: 78222837

Start: 1824973

End: 1825389

Strand: Direct

Name: nusB

Synonym: Gmet_1628

Alternate gene names: 78222837

Gene position: 1824973-1825389 (Clockwise)

Preceding gene: 78222836

Following gene: 78222838

Centisome position: 45.65

GC content: 59.23

Gene sequence:

>417_bases
GTGGGTGCCCGACGCCTCGGAAGGGAGATCGCCCTTCAGCTTCTCTACTCCCGCGATTATACCGTGGGTGAGGCCTCCTC
GCTTCTTGAGATGGTCTTTGACGAAGCCGAGCCGGGGACCGCTGCGGGGCGGGCTTTTTCCGACGAACTGGTTCGCGGTG
TTCTTGAGCACCGCGAAACTATCGACGCAACGATAACCGAGAAGTCGAAAAACTGGGCCATCTCCCGCATGGCGAAGGTG
GATCTCAACATCCTCCGGCTTGCGATTTACGAGCTCCTCTACCGTGGCGACATCCCCAAGAACGTCACCATCAACGAGGC
CATCGAAGTGGCGAAAAAATTCGGTACCGAGGATTCGCCTGCCTTCATCAACGGCATCCTCGACGAGGTCGCCTCGACCC
TCCCCGACAAGGGGTAG

Upstream 100 bases:

>100_bases
AGCAGGCCGTGGAGCGGGCAGGCACCAAGGCCGGCAACAAGGGCTTCGACGCCGCCATGACCGCCATTGAAACCGTCCGC
GTTTTCCGGGAGTTCCGCTA

Downstream 100 bases:

>100_bases
CTCCAGCCATTGCATCGCGTCATTCCATACTGAGCGAGGACGTATGAACGAGATAAAGGTGGGCCTTCTCGGCCTGGGGA
CCATTGGTACGGGGGTCGCC

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MGARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAGRAFSDELVRGVLEHRETIDATITEKSKNWAISRMAKV
DLNILRLAIYELLYRGDIPKNVTINEAIEVAKKFGTEDSPAFINGILDEVASTLPDKG

Sequences:

>Translated_138_residues
MGARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAGRAFSDELVRGVLEHRETIDATITEKSKNWAISRMAKV
DLNILRLAIYELLYRGDIPKNVTINEAIEVAKKFGTEDSPAFINGILDEVASTLPDKG
>Mature_137_residues
GARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAGRAFSDELVRGVLEHRETIDATITEKSKNWAISRMAKVD
LNILRLAIYELLYRGDIPKNVTINEAIEVAKKFGTEDSPAFINGILDEVASTLPDKG

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=130, Percent_Identity=34.6153846153846, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_GEOMG (Q39V65)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_384584.1
- ProteinModelPortal:   Q39V65
- SMR:   Q39V65
- STRING:   Q39V65
- GeneID:   3739367
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_1628
- NMPDR:   fig|269799.3.peg.1080
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   SDNSSRF
- PhylomeDB:   Q39V65
- ProtClustDB:   CLSK828489
- BioCyc:   GMET269799:GMET_1628-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15244; Mature: 15112

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAGRAFSDELVRGVLEHRET
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IDATITEKSKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIEVAKKFGTEDSP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCH
AFINGILDEVASTLPDKG
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAGRAFSDELVRGVLEHRET
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IDATITEKSKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIEVAKKFGTEDSP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCH
AFINGILDEVASTLPDKG
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA