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The map label for this gene is yfbE [C]

Identifier: 78222106

GI number: 78222106

Start: 975396

End: 976616

Strand: Reverse

Name: yfbE [C]

Synonym: Gmet_0886

Alternate gene names: 78222106

Gene position: 976616-975396 (Counterclockwise)

Preceding gene: 78222107

Following gene: 78222105

Centisome position: 24.43

GC content: 62.65

Gene sequence:

>1221_bases
ATGGCACTTCGCGCGGTTTTGTGCCATCATGTAGCGTTTTTCCGGAAGGAGGCAACCGTGCGCAGCGAATTTCTCCCCTT
TTCCAAACCAACCATAGACGACGACGAGATCAATGAGGTCGTTGCATCCCTGAAATCCGGGTGGATCACCACCGGCCCCA
AGGTGAAGCGCTTCGAGGAGGCGTTCAAGGCCTACGTCGGCGCCTCCTACGCCGTCCCCCTGAGTTCCGCCACCGCCGGG
CTCCACCTGACGCTCATCGCCCTGAAGCTGGACGAAGGGGACGAGATCATCACCACCCCCATGACCTTTGCCTCCACGGT
GAGCATGATCGTCCTCTGTGGGGCAAAGCCGGTGCTCGTCGACATCGAGCCGGGAACCCTCAACATCGACGCGGCAAAGA
TCCGCGAAAAGATCACCCCCCGCACGAAGGCGATCATCCCGGTCCACTTTGCCGGCCAGTCGTGTGATATGGACCCCATC
TTCGCCCTGGCCAAGGAGTTCGGCCTCACCGTCATCGAGGACGCGGCCCACGCCGCCGGCACCGAGTACAAGGGGAAGAG
GATCGGCTCCCTCGACAGCATCTCCATCTTTTCCTTCCACCCCAACAAGAACATCACCACCGGCGAAGGGGGAATGGTCT
GCACCGCCGACGAGACCCTGGCCGAGGAGATCTCGCTCCTGAAGTTCCACGGCATGAGCCGCGAGGCGTGGAAGCGCTTC
GCCGCCAGCGGCACCCCCAACTACGACATCCTCCTTCCCGGCTACAAGTACAACATGATGGACATCCAGGCCGCCATCGG
CATCCACCAGCTCCCGAAGCTGGACGGGTTCATCGAGAAGCGCCGGGAAATAGCCGAATTCTACAAGGCCGCCTTTGCCG
ACGTCCATGAACTGGCTACCCCGGCCCTCGCCCCCTACGACCAGCGCCATGCCTGGCACCTCTACACGCCGCTGGTCCGG
GTGGAGAAGCTCACCATCGATCGGGACACCTTCATGGCCGAGCTGAAGAATCTCAACATCGGCACCGGCCTCCACTACAA
GGCGATCCACCACCACGCCTGGTACCGGGAGAACATGCCGGTCCCCGCGGGATCCCTTCCCAACGCCGACTACGCCTCCG
ACCGCATCCTCTCCCTCCCCCTTTTCCCGGCCATGACCATGGACGACGCCCGGGACGTGGTGGCGGCGGTGAAGGATGTC
ATTGCCCGGAACAGGAAGTAG

Upstream 100 bases:

>100_bases
CTTGAGAAAACTCGTCACGACCCCGCCGCGGGAGTTGGGGAGAAAAGGAAAGGTTCTTCTCATCGCGAACCACTGACCCG
ACGGGGACAGCGTAAACGGT

Downstream 100 bases:

>100_bases
GCCATGAGCAAGCCCTATATCTCCATCATCATCCCTGTCTACAACGAGGAACCGAACCTCCAGAAACTCCTGGCGCGGCT
CTACCCGGTCATGACCGCCC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MALRAVLCHHVAFFRKEATVRSEFLPFSKPTIDDDEINEVVASLKSGWITTGPKVKRFEEAFKAYVGASYAVPLSSATAG
LHLTLIALKLDEGDEIITTPMTFASTVSMIVLCGAKPVLVDIEPGTLNIDAAKIREKITPRTKAIIPVHFAGQSCDMDPI
FALAKEFGLTVIEDAAHAAGTEYKGKRIGSLDSISIFSFHPNKNITTGEGGMVCTADETLAEEISLLKFHGMSREAWKRF
AASGTPNYDILLPGYKYNMMDIQAAIGIHQLPKLDGFIEKRREIAEFYKAAFADVHELATPALAPYDQRHAWHLYTPLVR
VEKLTIDRDTFMAELKNLNIGTGLHYKAIHHHAWYRENMPVPAGSLPNADYASDRILSLPLFPAMTMDDARDVVAAVKDV
IARNRK

Sequences:

>Translated_406_residues
MALRAVLCHHVAFFRKEATVRSEFLPFSKPTIDDDEINEVVASLKSGWITTGPKVKRFEEAFKAYVGASYAVPLSSATAG
LHLTLIALKLDEGDEIITTPMTFASTVSMIVLCGAKPVLVDIEPGTLNIDAAKIREKITPRTKAIIPVHFAGQSCDMDPI
FALAKEFGLTVIEDAAHAAGTEYKGKRIGSLDSISIFSFHPNKNITTGEGGMVCTADETLAEEISLLKFHGMSREAWKRF
AASGTPNYDILLPGYKYNMMDIQAAIGIHQLPKLDGFIEKRREIAEFYKAAFADVHELATPALAPYDQRHAWHLYTPLVR
VEKLTIDRDTFMAELKNLNIGTGLHYKAIHHHAWYRENMPVPAGSLPNADYASDRILSLPLFPAMTMDDARDVVAAVKDV
IARNRK
>Mature_405_residues
ALRAVLCHHVAFFRKEATVRSEFLPFSKPTIDDDEINEVVASLKSGWITTGPKVKRFEEAFKAYVGASYAVPLSSATAGL
HLTLIALKLDEGDEIITTPMTFASTVSMIVLCGAKPVLVDIEPGTLNIDAAKIREKITPRTKAIIPVHFAGQSCDMDPIF
ALAKEFGLTVIEDAAHAAGTEYKGKRIGSLDSISIFSFHPNKNITTGEGGMVCTADETLAEEISLLKFHGMSREAWKRFA
ASGTPNYDILLPGYKYNMMDIQAAIGIHQLPKLDGFIEKRREIAEFYKAAFADVHELATPALAPYDQRHAWHLYTPLVRV
EKLTIDRDTFMAELKNLNIGTGLHYKAIHHHAWYRENMPVPAGSLPNADYASDRILSLPLFPAMTMDDARDVVAAVKDVI
ARNRK

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=381, Percent_Identity=48.5564304461942, Blast_Score=350, Evalue=9e-98,
Organism=Escherichia coli, GI2367285, Length=386, Percent_Identity=31.6062176165803, Blast_Score=174, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44856; Mature: 44725

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRAVLCHHVAFFRKEATVRSEFLPFSKPTIDDDEINEVVASLKSGWITTGPKVKRFEE
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
AFKAYVGASYAVPLSSATAGLHLTLIALKLDEGDEIITTPMTFASTVSMIVLCGAKPVLV
HHHHHHCCCEEEECCCCCCCEEEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCCEEEE
DIEPGTLNIDAAKIREKITPRTKAIIPVHFAGQSCDMDPIFALAKEFGLTVIEDAAHAAG
EECCCEEECCHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEHHHHHHCC
TEYKGKRIGSLDSISIFSFHPNKNITTGEGGMVCTADETLAEEISLLKFHGMSREAWKRF
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHH
AASGTPNYDILLPGYKYNMMDIQAAIGIHQLPKLDGFIEKRREIAEFYKAAFADVHELAT
HCCCCCCEEEEECCCCCCHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PALAPYDQRHAWHLYTPLVRVEKLTIDRDTFMAELKNLNIGTGLHYKAIHHHAWYRENMP
CCCCCCCCCCCEEEHHHHHHHHEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
VPAGSLPNADYASDRILSLPLFPAMTMDDARDVVAAVKDVIARNRK
CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALRAVLCHHVAFFRKEATVRSEFLPFSKPTIDDDEINEVVASLKSGWITTGPKVKRFEE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
AFKAYVGASYAVPLSSATAGLHLTLIALKLDEGDEIITTPMTFASTVSMIVLCGAKPVLV
HHHHHHCCCEEEECCCCCCCEEEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCCEEEE
DIEPGTLNIDAAKIREKITPRTKAIIPVHFAGQSCDMDPIFALAKEFGLTVIEDAAHAAG
EECCCEEECCHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEHHHHHHCC
TEYKGKRIGSLDSISIFSFHPNKNITTGEGGMVCTADETLAEEISLLKFHGMSREAWKRF
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHH
AASGTPNYDILLPGYKYNMMDIQAAIGIHQLPKLDGFIEKRREIAEFYKAAFADVHELAT
HCCCCCCEEEEECCCCCCHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PALAPYDQRHAWHLYTPLVRVEKLTIDRDTFMAELKNLNIGTGLHYKAIHHHAWYRENMP
CCCCCCCCCCCEEEHHHHHHHHEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
VPAGSLPNADYASDRILSLPLFPAMTMDDARDVVAAVKDVIARNRK
CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]