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The map label for this gene is ycbY [C]

Identifier: 78221619

GI number: 78221619

Start: 440319

End: 441488

Strand: Direct

Name: ycbY [C]

Synonym: Gmet_0398

Alternate gene names: 78221619

Gene position: 440319-441488 (Clockwise)

Preceding gene: 78221618

Following gene: 78221620

Centisome position: 11.02

GC content: 62.74

Gene sequence:

>1170_bases
TTGACGATCATCAGGAGAAAAGCAGCGGCCGGACCCTTCGTCGGCGAGCAGTCATTCTTTGCCACCACCGCCAAGGGGGT
GGAGGAGGTGCTTGCTCGGGAGATGACCAGCCTCGGCCTCGGCGGAGTGACCATGGATAAGGGGGGAGTCCGTTTCACGG
GGGATCTTTCCGCCTGCTACCGGGCCAATCTCTGGCTCAGGACCGCGAGCCGCATCCTTATCACCCTGACCGAATTTCCG
TGCCACTCGCCTCAGGATCTCTACGACGGGGTCCGTGCCCTCCCCTGGGACCGCTATCTCACCCCTGACACGACCCTTGC
CGTTGAATGCGTGCTGCGCGATTCGGCCCTCACCCACTCGGGGTTTGTGGCCCTCAAGACCAAGGATGCCATTGTTGATA
CCCTCCGGGACCGGTTCGGACGCCGCCCCAGCGTGAATCCCAAGGATCCCGATCTCCTGGTGAATGTCCATTTAGTCCGC
AACCGTTGCACCATCAGTCTCGACAGTTCCGGCACCGGACTTGACCGTCGCGGGTACCGGGCCGAGGCCGGCGAGGCTCC
TTTGCGGGAGACCCTGGCCGCGGCCCTTGTGCTTCTCACCGATTGGGATGGGACGGTTCCCTTGGTCGACCCCCTCTGCG
GCTCCGGGACGATTCTCATAGAGGCAGTCCTCAAGGCCTTGAACCGAGCGCCCGGGCTTGTCAGGGAGCGCTTCGGGTTC
CAGCGCTGGCCAGCCTTTGATGTCCCCCGTTGGCGGCGTCTCCTTGAGGAGGCGCGGCAGACGGAGCGGACAACACTTGC
CGTGCCCATTCTCGGCAGCGACCGTCTGGAGGATGTTCTTGCCGTGGCCCGTGGCAACAGTCGCCGCGCCGGCGTCGAGA
AGTTCATCTCCTTTGAGGCGCGGGACCTGCGAGATCTCGTTCCGCCTCCTGCGCCGGGAGTCATCCTTACGAATCCTCCC
TACGGCCGGCGTCTGGGTGATGAGGAACAACTGAAATCCTTTTATCGCCAGATCGGTGATGTCTTCAAACAGCGCTGCGC
CGGGTACACTGCCTGGCTGTTCACGGGGAACCTTGACCTCGCCAAGGAGGTAGGACTCAAGGCCTCCCGCAGGATTGCTC
TTTTCAACGGCCCCCTCGACTGCCGACTCTTGAAGTATGATCTGTACTGA

Upstream 100 bases:

>100_bases
ATCCGCGGGAGCCCCAGATTCGCGCGCCTCACCTCTCTCTCCCCTGCGGCGCCCGGGAGGGAGTTGCCGCCATCAATGCC
GTTCTTGCGGAGGAATCCCC

Downstream 100 bases:

>100_bases
ATGTCCCGATTGGGAAACGGAGCGAATTTATTGGCTTCATCTCCTGCTCTCCAGCCGGTTGATGCGGAAAAAACCTTGAC
ACGTCGCGCCCCTTTGCGTA

Product: putative RNA methylase:THUMP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MTIIRRKAAAGPFVGEQSFFATTAKGVEEVLAREMTSLGLGGVTMDKGGVRFTGDLSACYRANLWLRTASRILITLTEFP
CHSPQDLYDGVRALPWDRYLTPDTTLAVECVLRDSALTHSGFVALKTKDAIVDTLRDRFGRRPSVNPKDPDLLVNVHLVR
NRCTISLDSSGTGLDRRGYRAEAGEAPLRETLAAALVLLTDWDGTVPLVDPLCGSGTILIEAVLKALNRAPGLVRERFGF
QRWPAFDVPRWRRLLEEARQTERTTLAVPILGSDRLEDVLAVARGNSRRAGVEKFISFEARDLRDLVPPPAPGVILTNPP
YGRRLGDEEQLKSFYRQIGDVFKQRCAGYTAWLFTGNLDLAKEVGLKASRRIALFNGPLDCRLLKYDLY

Sequences:

>Translated_389_residues
MTIIRRKAAAGPFVGEQSFFATTAKGVEEVLAREMTSLGLGGVTMDKGGVRFTGDLSACYRANLWLRTASRILITLTEFP
CHSPQDLYDGVRALPWDRYLTPDTTLAVECVLRDSALTHSGFVALKTKDAIVDTLRDRFGRRPSVNPKDPDLLVNVHLVR
NRCTISLDSSGTGLDRRGYRAEAGEAPLRETLAAALVLLTDWDGTVPLVDPLCGSGTILIEAVLKALNRAPGLVRERFGF
QRWPAFDVPRWRRLLEEARQTERTTLAVPILGSDRLEDVLAVARGNSRRAGVEKFISFEARDLRDLVPPPAPGVILTNPP
YGRRLGDEEQLKSFYRQIGDVFKQRCAGYTAWLFTGNLDLAKEVGLKASRRIALFNGPLDCRLLKYDLY
>Mature_388_residues
TIIRRKAAAGPFVGEQSFFATTAKGVEEVLAREMTSLGLGGVTMDKGGVRFTGDLSACYRANLWLRTASRILITLTEFPC
HSPQDLYDGVRALPWDRYLTPDTTLAVECVLRDSALTHSGFVALKTKDAIVDTLRDRFGRRPSVNPKDPDLLVNVHLVRN
RCTISLDSSGTGLDRRGYRAEAGEAPLRETLAAALVLLTDWDGTVPLVDPLCGSGTILIEAVLKALNRAPGLVRERFGFQ
RWPAFDVPRWRRLLEEARQTERTTLAVPILGSDRLEDVLAVARGNSRRAGVEKFISFEARDLRDLVPPPAPGVILTNPPY
GRRLGDEEQLKSFYRQIGDVFKQRCAGYTAWLFTGNLDLAKEVGLKASRRIALFNGPLDCRLLKYDLY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=378, Percent_Identity=41.005291005291, Blast_Score=262, Evalue=4e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43188; Mature: 43057

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIIRRKAAAGPFVGEQSFFATTAKGVEEVLAREMTSLGLGGVTMDKGGVRFTGDLSACY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEECCHHHHH
RANLWLRTASRILITLTEFPCHSPQDLYDGVRALPWDRYLTPDTTLAVECVLRDSALTHS
HHHHHHEECCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCC
GFVALKTKDAIVDTLRDRFGRRPSVNPKDPDLLVNVHLVRNRCTISLDSSGTGLDRRGYR
CEEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECEEEEEECCCCCCCCCCCCC
AEAGEAPLRETLAAALVLLTDWDGTVPLVDPLCGSGTILIEAVLKALNRAPGLVRERFGF
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC
QRWPAFDVPRWRRLLEEARQTERTTLAVPILGSDRLEDVLAVARGNSRRAGVEKFISFEA
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
RDLRDLVPPPAPGVILTNPPYGRRLGDEEQLKSFYRQIGDVFKQRCAGYTAWLFTGNLDL
HHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHH
AKEVGLKASRRIALFNGPLDCRLLKYDLY
HHHHCCCCCCEEEEECCCCCEEEEEEECC
>Mature Secondary Structure 
TIIRRKAAAGPFVGEQSFFATTAKGVEEVLAREMTSLGLGGVTMDKGGVRFTGDLSACY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEECCHHHHH
RANLWLRTASRILITLTEFPCHSPQDLYDGVRALPWDRYLTPDTTLAVECVLRDSALTHS
HHHHHHEECCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCC
GFVALKTKDAIVDTLRDRFGRRPSVNPKDPDLLVNVHLVRNRCTISLDSSGTGLDRRGYR
CEEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECEEEEEECCCCCCCCCCCCC
AEAGEAPLRETLAAALVLLTDWDGTVPLVDPLCGSGTILIEAVLKALNRAPGLVRERFGF
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC
QRWPAFDVPRWRRLLEEARQTERTTLAVPILGSDRLEDVLAVARGNSRRAGVEKFISFEA
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
RDLRDLVPPPAPGVILTNPPYGRRLGDEEQLKSFYRQIGDVFKQRCAGYTAWLFTGNLDL
HHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHH
AKEVGLKASRRIALFNGPLDCRLLKYDLY
HHHHCCCCCCEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]