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The map label for this gene is yraN [C]

Identifier: 78189945

GI number: 78189945

Start: 2529619

End: 2530008

Strand: Reverse

Name: yraN [C]

Synonym: Cag_1992

Alternate gene names: 78189945

Gene position: 2530008-2529619 (Counterclockwise)

Preceding gene: 78189946

Following gene: 78189941

Centisome position: 98.36

GC content: 45.13

Gene sequence:

>390_bases
ATGAATCCTCCCAATTCAACCTGTGAGCTTGGTCGCCAAGGTGAAGCCTTGGCTGCAACGTATTTGCAAAACGAGGGATA
CCAAATTCTTGAAAGGAATTATCGGTTTCGCCATAATGAAATTGACCTCATTGCGCTGGATGGCTCAACACTTTGTTTTG
TAGAGGTAAAAGCGCGTCTTTCAAATAAAGCAGGCAGTCCATTAGATGCCGTTACCGTTGCCAAGCAGCGCGAAATTATT
CGTGCGGCTCAAGCCTATTTAACCTTTAGCGGGCAAGAGTGCGATTGCCGTTTTGATGTAATTGGCGTAAACGTTCATGC
CATGCACGAGGCACGCATTAGCTCATTTACTATTGAGCACATTAAAGATGCTTTTTGGGTAGAGCAGTAG

Upstream 100 bases:

>100_bases
CAGGCTATCCAACAAGCGCACACATTGAAGCCATTCGCCAGCATGGACGCTGCCCAATACATCGTCAAAGCTTTAAACTG
CGCCAACTTGGCGAAAAAGT

Downstream 100 bases:

>100_bases
GGAGCGTTTATTTATGGTTTGTGTGATTAAGAGGCTTGATATTATGAAACAATACGCACACCAAACATTTGGGATAACCA
CAGGAGGACAGAGATTCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MNPPNSTCELGRQGEALAATYLQNEGYQILERNYRFRHNEIDLIALDGSTLCFVEVKARLSNKAGSPLDAVTVAKQREII
RAAQAYLTFSGQECDCRFDVIGVNVHAMHEARISSFTIEHIKDAFWVEQ

Sequences:

>Translated_129_residues
MNPPNSTCELGRQGEALAATYLQNEGYQILERNYRFRHNEIDLIALDGSTLCFVEVKARLSNKAGSPLDAVTVAKQREII
RAAQAYLTFSGQECDCRFDVIGVNVHAMHEARISSFTIEHIKDAFWVEQ
>Mature_129_residues
MNPPNSTCELGRQGEALAATYLQNEGYQILERNYRFRHNEIDLIALDGSTLCFVEVKARLSNKAGSPLDAVTVAKQREII
RAAQAYLTFSGQECDCRFDVIGVNVHAMHEARISSFTIEHIKDAFWVEQ

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=123, Percent_Identity=34.1463414634146, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1992_CHLCH (Q3AP35)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_380283.1
- ProteinModelPortal:   Q3AP35
- STRING:   Q3AP35
- GeneID:   3747102
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1992
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   MAEHNEL
- ProtClustDB:   PRK12497
- BioCyc:   CCHL340177:CAG_1992-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14534; Mature: 14534

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPNSTCELGRQGEALAATYLQNEGYQILERNYRFRHNEIDLIALDGSTLCFVEVKARL
CCCCCCCHHCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEEECCCEEEEEEEEEHH
SNKAGSPLDAVTVAKQREIIRAAQAYLTFSGQECDCRFDVIGVNVHAMHEARISSFTIEH
CCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECEEEEEHHHHHHHHHHHH
IKDAFWVEQ
HHHHHCCCC
>Mature Secondary Structure
MNPPNSTCELGRQGEALAATYLQNEGYQILERNYRFRHNEIDLIALDGSTLCFVEVKARL
CCCCCCCHHCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEEECCCEEEEEEEEEHH
SNKAGSPLDAVTVAKQREIIRAAQAYLTFSGQECDCRFDVIGVNVHAMHEARISSFTIEH
CCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECEEEEEHHHHHHHHHHHH
IKDAFWVEQ
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA