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The map label for this gene is ymdB [H]

Identifier: 78189565

GI number: 78189565

Start: 2095811

End: 2096644

Strand: Reverse

Name: ymdB [H]

Synonym: Cag_1605

Alternate gene names: 78189565

Gene position: 2096644-2095811 (Counterclockwise)

Preceding gene: 78189567

Following gene: 78189562

Centisome position: 81.52

GC content: 48.44

Gene sequence:

>834_bases
ATGGCACAAAAAACTATCAACCTCCTTTTTATTGGCGACGTTGTTGGCACACCCGGTCTCCAAATGGTCAGCCGAATGCT
TAAAAGCTTTATAACAAAACATCGGGTTGACTTTGTGGTGTGCAATGGCGAAAACGCCCATCAAGGTAAGGGATTAAGTG
CTGAAGCGTTGAATCAACTCTTGGAAGCGGGCGTGGATGTAGTAACGGGCGGCAACCATACATGGAGCAACTTTAACTTT
TTTGAAACGCTGAAAACGCACCCAAAAGTATTGCGTCCGCAAAACTATCCAAAAGGCACCTACGGTAAAGGATACGCCAT
TTACAAGCTTCCAAACGGTTTAGGCGATATAGCTGTGGTGAACTTGCAAGGACGCACCTTTATGTACACCATTGACTGCC
CCTTCCGCACGGCTGATTGGGTGCTTAAGCAAATCAAAGAGCAGTCGAAGGAGAGCGTTAAGTGCATTTTTGTAGATTTT
CATGCCGAAGCTACCGCCGAAAAAGTTGCACTTGGCTGGTACCTTGATGGAAGGGTTTCCGCCGTTATTGGCACGCATAC
GCATGTACCCACTGCTGACGAGCGGTTGCTCCCAAAAGGCACGGCGTACTGCACCGATGCAGGCATGAGCGGACCGCACC
AATCGGTTATTGGCATGCAAATTAAGTCGGCAACCGATCGGATGCTTTACCAAACACCACACAAATATGAGTGCGCCGAA
GATGACGTCCATTTTTCAGCCGTGTTGCTCACCCTCGATCTTGGAAGTGGTAAAGCGCTTGGCATTGAACGCATTTTTTA
TCCTGAATTTGAGCGTGGCACGGTGGTGCGATAA

Upstream 100 bases:

>100_bases
GTAAACAACAACAGGAAAGGCTTGGTGGCAAAAGCCAAAAGTGTAACTTCAACGCCAAAAGCTCATCAACAAAATTATTC
CAAAGAACATCACCTCCCTT

Downstream 100 bases:

>100_bases
GGTTTTGCGTAGGAGAAGAGGAGGGGGGAGAAATGCTTTTTGAGAGCGTAGCGATGTGTCCATCCATTGCGTTGGTGCTA
ATTGTATGGATTACTTCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MAQKTINLLFIGDVVGTPGLQMVSRMLKSFITKHRVDFVVCNGENAHQGKGLSAEALNQLLEAGVDVVTGGNHTWSNFNF
FETLKTHPKVLRPQNYPKGTYGKGYAIYKLPNGLGDIAVVNLQGRTFMYTIDCPFRTADWVLKQIKEQSKESVKCIFVDF
HAEATAEKVALGWYLDGRVSAVIGTHTHVPTADERLLPKGTAYCTDAGMSGPHQSVIGMQIKSATDRMLYQTPHKYECAE
DDVHFSAVLLTLDLGSGKALGIERIFYPEFERGTVVR

Sequences:

>Translated_277_residues
MAQKTINLLFIGDVVGTPGLQMVSRMLKSFITKHRVDFVVCNGENAHQGKGLSAEALNQLLEAGVDVVTGGNHTWSNFNF
FETLKTHPKVLRPQNYPKGTYGKGYAIYKLPNGLGDIAVVNLQGRTFMYTIDCPFRTADWVLKQIKEQSKESVKCIFVDF
HAEATAEKVALGWYLDGRVSAVIGTHTHVPTADERLLPKGTAYCTDAGMSGPHQSVIGMQIKSATDRMLYQTPHKYECAE
DDVHFSAVLLTLDLGSGKALGIERIFYPEFERGTVVR
>Mature_276_residues
AQKTINLLFIGDVVGTPGLQMVSRMLKSFITKHRVDFVVCNGENAHQGKGLSAEALNQLLEAGVDVVTGGNHTWSNFNFF
ETLKTHPKVLRPQNYPKGTYGKGYAIYKLPNGLGDIAVVNLQGRTFMYTIDCPFRTADWVLKQIKEQSKESVKCIFVDFH
AEATAEKVALGWYLDGRVSAVIGTHTHVPTADERLLPKGTAYCTDAGMSGPHQSVIGMQIKSATDRMLYQTPHKYECAED
DVHFSAVLLTLDLGSGKALGIERIFYPEFERGTVVR

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30629; Mature: 30498

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKTINLLFIGDVVGTPGLQMVSRMLKSFITKHRVDFVVCNGENAHQGKGLSAEALNQL
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHH
LEAGVDVVTGGNHTWSNFNFFETLKTHPKVLRPQNYPKGTYGKGYAIYKLPNGLGDIAVV
HHCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEE
NLQGRTFMYTIDCPFRTADWVLKQIKEQSKESVKCIFVDFHAEATAEKVALGWYLDGRVS
EECCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEECCEEE
AVIGTHTHVPTADERLLPKGTAYCTDAGMSGPHQSVIGMQIKSATDRMLYQTPHKYECAE
EEEECCCCCCCCCHHCCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCC
DDVHFSAVLLTLDLGSGKALGIERIFYPEFERGTVVR
CCCEEEEEEEEEECCCCCEECEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AQKTINLLFIGDVVGTPGLQMVSRMLKSFITKHRVDFVVCNGENAHQGKGLSAEALNQL
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHH
LEAGVDVVTGGNHTWSNFNFFETLKTHPKVLRPQNYPKGTYGKGYAIYKLPNGLGDIAVV
HHCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEE
NLQGRTFMYTIDCPFRTADWVLKQIKEQSKESVKCIFVDFHAEATAEKVALGWYLDGRVS
EECCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEECCEEE
AVIGTHTHVPTADERLLPKGTAYCTDAGMSGPHQSVIGMQIKSATDRMLYQTPHKYECAE
EEEECCCCCCCCCHHCCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCC
DDVHFSAVLLTLDLGSGKALGIERIFYPEFERGTVVR
CCCEEEEEEEEEECCCCCEECEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]