| Definition | Chlorobium chlorochromatii CaD3 chromosome, complete genome. |
|---|---|
| Accession | NC_007514 |
| Length | 2,572,079 |
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The map label for this gene is icd [H]
Identifier: 78189373
GI number: 78189373
Start: 1877389
End: 1879614
Strand: Reverse
Name: icd [H]
Synonym: Cag_1410
Alternate gene names: 78189373
Gene position: 1879614-1877389 (Counterclockwise)
Preceding gene: 78189374
Following gene: 78189372
Centisome position: 73.08
GC content: 45.06
Gene sequence:
>2226_bases ATGGCACAAAACGCAACTATTATTTACACCAAAATTGATGAAGCGCCAGCGCTTGCTACGTATTCGCTGTTGCCTATTCT GCAAGCTTATTTTAAGGGCACGGGTGTAACTATTGAATCGAGCGATATTTCACTCGCTGGTAGAATTATTGCCAACTTTC CAGAAAATCTTACTGAAAGCCAGCGCATCCCCGATAACTTGAGTGCGTTAGGCCAACTTGCTTTAACTCCTGAAGCGAAT ATTATTAAGCTGCCAAACATTAGCGCTTCAATTCCTCAGCTTCAAGCGGCTATTAAAGAGCTGCAAGAGCACGGCTATAA TATTCCCAATTATCCTGAAGCGCCAGCAAACGACGCAGAAAAAGAGTTGCAAGTTCGTTTTGCAAAAGTGCTTGGTAGTG CCGTAAACCCTGTACTTCGCGAAGGTAACTCCGACCGTCGTGCACCGCTTTCGGTTAAAAATTATGCAAAAAAGAATCCC CATAAAATGTCGGCATGGAGCGCTGATTCAGCTTCTCATATTGCTCATATGGAGGGTGGCGACTTTTATGGTAGCGAAAA ATCGGTTACTGTGGCTGATGCTACCAATGTAAAAATTGAGTTTGTAGGTAATGATGGCAGCAGCAAGGTTTTGAAAGAGA AAACGGCGTTGCTTGCTGGTGAAGTTATTGATACGTCGGTTATGAACGTTCGTTCACTCCGAGCATTTTTTGACCAGCAA ATTACCGATGCTAAAGAAAATGGCTTGCTTTTGTCGCTACACTTAAAAGCCACCATGATGAAGATTTCGGATCCCATCAT GTTTGGTCATGCTGTTACTGTTTATTATAAGGATGTGTTTGAAAAACATGCGGCTACTATTGCAGAGCTTGGTGTGAATG TCAATAACGGTCTTGGCGACTTGTATGCAAAGATTGAGAAGTTGCCTGCCGATAAAAAAGCTGCAATTGAGGCTGATATT CAAGCGGTGTATGCAAATCGTCCCCCGCTTGCTATGGTTGATTCCGATAAAGGAATTACCAACCTCCACGTTCCAAACGA TATTATTGTTGATGCTTCCATGCCGGTTGTTATTCGTGATGGTGGCAAAATGTGGGGACCTGATGGCAAATTGCACGACA CTAAAGCAATGGTGCCTGATCGTTGCTATGCAACCATGTATCAAGCAATGGTTGAGGATTGCAAAAAGAATGGAGCATTT AACCCATCAACCATTGGCAGCGTGCCTAACGTTGGTTTAATGGCTCAAAAAGCTGAAGAGTACGGTTCGCACGATAAAAC CTTTACCGCTCCAGCAAACGGTGTGATTCGCGTGGTGGATGCTTCGGGCAAAACTCTGCTTGAGCAGAATGTTGAAACGG GCGACATTTTTAGAATGTGCCAAACCAAAGATGCTCCAATTCGTGATTGGGTAAAACTTGCCGTTAATCGTGCACGCATT ACGGGTGCGCCTGCTATTTTCTGGCTCGACAGCAACCGTGCTCACGATGCTCAAATTATCAACAAGGTAAACGAGTACCT CAAAGAGCACGATACCAACGGTCTTGATATTCGCATTATGACGCCAGTGGATGCAATGCGCTTTTCGCTTGAGCGCTTCC GTGCTGGAGAGGATACCATTTCGGTTACGGGTAACGTGCTTCGCGACTACCTCACCGACCTCTTCCCAATTATTGAGCTT GGCACCAGTGCAAAAATGCTCTCAATTGTGCCATTGATGAATGGTGGTGGATTGTTTGAAACCGGTGCAGGTGGATCTGC TCCAAAACATGTGCAGCAGTTCCAAAAAGAGGGATACCTCCGTTGGGATTCACTTGGTGAGTTCTCAGCGCTTGCCGCTT CGCTTGATCACCTTTCTCGTGTGTTCAACAATCCAAAAGCAGCAGTTCTTGCTGAAACATTGGATGAGGCTATTGGCAAG TTCCTTGATACCAACAAATCACCAGCCCGTAAAGTTGGTCAAATTGACAACCGTGGTAGCCACTACTATCTTGCTATGTA TTGGGCTGAAGCACTTGCTGCACAAAGCAAGGATGCTGAGTTGCAAGCTTGTTTTGCCTCTGTAGCTAAAGCATTGGCTG AGAACGAAGAAAAAATTAACGCTGAGTTAATTGGTGCCCAAGGCTCTCCTGTTGATATGGGCGGTTACTATCATCCAAAT GATGAGCTGACCTCAAAGGCAATGCGCCCAAGTGCCACTTTAAATGCAATTATTGATGCGATCTAA
Upstream 100 bases:
>100_bases TTGCTGCGGCGGTGTTCTGGTTGGTTTGTTGCTTATTTTTTCTTGTTCTTTCTTCTCTCTTGTAATAACTCTCTCAATCA ATTAAACCTTATTGTAGCTT
Downstream 100 bases:
>100_bases GAAGTTGCTTACAAGCTCATAATTGTTTAGAACGCTAAGAAGCCCGGAGTTTTGCTCTGGGCTTCTTTTATTTATGGGGA AAAAATGCGCACTCAGAGTT
Product: isocitrate dehydrogenase NADP-dependent, monomeric type
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MAQNATIIYTKIDEAPALATYSLLPILQAYFKGTGVTIESSDISLAGRIIANFPENLTESQRIPDNLSALGQLALTPEAN IIKLPNISASIPQLQAAIKELQEHGYNIPNYPEAPANDAEKELQVRFAKVLGSAVNPVLREGNSDRRAPLSVKNYAKKNP HKMSAWSADSASHIAHMEGGDFYGSEKSVTVADATNVKIEFVGNDGSSKVLKEKTALLAGEVIDTSVMNVRSLRAFFDQQ ITDAKENGLLLSLHLKATMMKISDPIMFGHAVTVYYKDVFEKHAATIAELGVNVNNGLGDLYAKIEKLPADKKAAIEADI QAVYANRPPLAMVDSDKGITNLHVPNDIIVDASMPVVIRDGGKMWGPDGKLHDTKAMVPDRCYATMYQAMVEDCKKNGAF NPSTIGSVPNVGLMAQKAEEYGSHDKTFTAPANGVIRVVDASGKTLLEQNVETGDIFRMCQTKDAPIRDWVKLAVNRARI TGAPAIFWLDSNRAHDAQIINKVNEYLKEHDTNGLDIRIMTPVDAMRFSLERFRAGEDTISVTGNVLRDYLTDLFPIIEL GTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYLRWDSLGEFSALAASLDHLSRVFNNPKAAVLAETLDEAIGK FLDTNKSPARKVGQIDNRGSHYYLAMYWAEALAAQSKDAELQACFASVAKALAENEEKINAELIGAQGSPVDMGGYYHPN DELTSKAMRPSATLNAIIDAI
Sequences:
>Translated_741_residues MAQNATIIYTKIDEAPALATYSLLPILQAYFKGTGVTIESSDISLAGRIIANFPENLTESQRIPDNLSALGQLALTPEAN IIKLPNISASIPQLQAAIKELQEHGYNIPNYPEAPANDAEKELQVRFAKVLGSAVNPVLREGNSDRRAPLSVKNYAKKNP HKMSAWSADSASHIAHMEGGDFYGSEKSVTVADATNVKIEFVGNDGSSKVLKEKTALLAGEVIDTSVMNVRSLRAFFDQQ ITDAKENGLLLSLHLKATMMKISDPIMFGHAVTVYYKDVFEKHAATIAELGVNVNNGLGDLYAKIEKLPADKKAAIEADI QAVYANRPPLAMVDSDKGITNLHVPNDIIVDASMPVVIRDGGKMWGPDGKLHDTKAMVPDRCYATMYQAMVEDCKKNGAF NPSTIGSVPNVGLMAQKAEEYGSHDKTFTAPANGVIRVVDASGKTLLEQNVETGDIFRMCQTKDAPIRDWVKLAVNRARI TGAPAIFWLDSNRAHDAQIINKVNEYLKEHDTNGLDIRIMTPVDAMRFSLERFRAGEDTISVTGNVLRDYLTDLFPIIEL GTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYLRWDSLGEFSALAASLDHLSRVFNNPKAAVLAETLDEAIGK FLDTNKSPARKVGQIDNRGSHYYLAMYWAEALAAQSKDAELQACFASVAKALAENEEKINAELIGAQGSPVDMGGYYHPN DELTSKAMRPSATLNAIIDAI >Mature_740_residues AQNATIIYTKIDEAPALATYSLLPILQAYFKGTGVTIESSDISLAGRIIANFPENLTESQRIPDNLSALGQLALTPEANI IKLPNISASIPQLQAAIKELQEHGYNIPNYPEAPANDAEKELQVRFAKVLGSAVNPVLREGNSDRRAPLSVKNYAKKNPH KMSAWSADSASHIAHMEGGDFYGSEKSVTVADATNVKIEFVGNDGSSKVLKEKTALLAGEVIDTSVMNVRSLRAFFDQQI TDAKENGLLLSLHLKATMMKISDPIMFGHAVTVYYKDVFEKHAATIAELGVNVNNGLGDLYAKIEKLPADKKAAIEADIQ AVYANRPPLAMVDSDKGITNLHVPNDIIVDASMPVVIRDGGKMWGPDGKLHDTKAMVPDRCYATMYQAMVEDCKKNGAFN PSTIGSVPNVGLMAQKAEEYGSHDKTFTAPANGVIRVVDASGKTLLEQNVETGDIFRMCQTKDAPIRDWVKLAVNRARIT GAPAIFWLDSNRAHDAQIINKVNEYLKEHDTNGLDIRIMTPVDAMRFSLERFRAGEDTISVTGNVLRDYLTDLFPIIELG TSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYLRWDSLGEFSALAASLDHLSRVFNNPKAAVLAETLDEAIGKF LDTNKSPARKVGQIDNRGSHYYLAMYWAEALAAQSKDAELQACFASVAKALAENEEKINAELIGAQGSPVDMGGYYHPND ELTSKAMRPSATLNAIIDAI
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80468; Mature: 80337
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQNATIIYTKIDEAPALATYSLLPILQAYFKGTGVTIESSDISLAGRIIANFPENLTES CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCHHHHHH QRIPDNLSALGQLALTPEANIIKLPNISASIPQLQAAIKELQEHGYNIPNYPEAPANDAE HCCCCCHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH KELQVRFAKVLGSAVNPVLREGNSDRRAPLSVKNYAKKNPHKMSAWSADSASHIAHMEGG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHEEECCCC DFYGSEKSVTVADATNVKIEFVGNDGSSKVLKEKTALLAGEVIDTSVMNVRSLRAFFDQQ CCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITDAKENGLLLSLHLKATMMKISDPIMFGHAVTVYYKDVFEKHAATIAELGVNVNNGLGD HCCCCCCCEEEEEEHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH LYAKIEKLPADKKAAIEADIQAVYANRPPLAMVDSDKGITNLHVPNDIIVDASMPVVIRD HHHHHHHCCCCCHHHHHHHHHHEECCCCCEEEEECCCCCEEEECCCCEEEECCCCEEEEC GGKMWGPDGKLHDTKAMVPDRCYATMYQAMVEDCKKNGAFNPSTIGSVPNVGLMAQKAEE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFTAPANGVIRVVDASGKTLLEQNVETGDIFRMCQTKDAPIRDWVKLAVNRARI HCCCCCEEECCCCCEEEEEECCCCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHEE TGAPAIFWLDSNRAHDAQIINKVNEYLKEHDTNGLDIRIMTPVDAMRFSLERFRAGEDTI CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIIELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYL EHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCCE RWDSLGEFSALAASLDHLSRVFNNPKAAVLAETLDEAIGKFLDTNKSPARKVGQIDNRGS ECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC HYYLAMYWAEALAAQSKDAELQACFASVAKALAENEEKINAELIGAQGSPVDMGGYYHPN EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCCCCCCEECCC DELTSKAMRPSATLNAIIDAI HHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure AQNATIIYTKIDEAPALATYSLLPILQAYFKGTGVTIESSDISLAGRIIANFPENLTES CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCHHHHHH QRIPDNLSALGQLALTPEANIIKLPNISASIPQLQAAIKELQEHGYNIPNYPEAPANDAE HCCCCCHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH KELQVRFAKVLGSAVNPVLREGNSDRRAPLSVKNYAKKNPHKMSAWSADSASHIAHMEGG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHEEECCCC DFYGSEKSVTVADATNVKIEFVGNDGSSKVLKEKTALLAGEVIDTSVMNVRSLRAFFDQQ CCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITDAKENGLLLSLHLKATMMKISDPIMFGHAVTVYYKDVFEKHAATIAELGVNVNNGLGD HCCCCCCCEEEEEEHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH LYAKIEKLPADKKAAIEADIQAVYANRPPLAMVDSDKGITNLHVPNDIIVDASMPVVIRD HHHHHHHCCCCCHHHHHHHHHHEECCCCCEEEEECCCCCEEEECCCCEEEECCCCEEEEC GGKMWGPDGKLHDTKAMVPDRCYATMYQAMVEDCKKNGAFNPSTIGSVPNVGLMAQKAEE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFTAPANGVIRVVDASGKTLLEQNVETGDIFRMCQTKDAPIRDWVKLAVNRARI HCCCCCEEECCCCCEEEEEECCCCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHEE TGAPAIFWLDSNRAHDAQIINKVNEYLKEHDTNGLDIRIMTPVDAMRFSLERFRAGEDTI CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIIELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYL EHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCCE RWDSLGEFSALAASLDHLSRVFNNPKAAVLAETLDEAIGKFLDTNKSPARKVGQIDNRGS ECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC HYYLAMYWAEALAAQSKDAELQACFASVAKALAENEEKINAELIGAQGSPVDMGGYYHPN EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCCCCCCEECCC DELTSKAMRPSATLNAIIDAI HHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]