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The map label for this gene is 78188976

Identifier: 78188976

GI number: 78188976

Start: 1348798

End: 1349514

Strand: Reverse

Name: 78188976

Synonym: Cag_1009

Alternate gene names: NA

Gene position: 1349514-1348798 (Counterclockwise)

Preceding gene: 78188977

Following gene: 78188975

Centisome position: 52.47

GC content: 40.17

Gene sequence:

>717_bases
ATGAAAAATAGTATTGAATTTAAGGTTTATGGACGGGAAGCTATGTTTACCGACCCAGTTTCCAGAATAGGAGGAGAAAA
GTGCAGTTATCATATCCCAACCTATGAAGCACTCAAAGGGATAGTTAAATCTATCTACTGGAAGCCAACTATTATTTGGG
TTGTTGATAAGGTTCGGGTTATGAAACCTATCAGAACGAAAACTAAATGCTTGAAGCCACTTAAGTACCATGAAAAAGGG
AATTCGTTAGCTATTTACAACTATCTCTGCGATGTTGAATATCAGGTATTAGCTCATTTTGAATGGAATCTACATCGCCC
TGAATTGGCTCAAGATTGCATTAATGGTAAACACTACAGCGTTGCATTACGGGCACTTGACAAGGGAGGGCGACAAGACA
TCTTTCTTGGAACCAGAGAATGTCAAGGATATGTAGAACCCTGCAAGTTTGGGGAAGGAAAGGGTGAGTATGACAACATT
TCAGAGCTTGCGTTTGGTTTTACTTTTCACGGCTTTGATTATCCTGATGAAACAGGGCAGAAGATGTTCAGAAGCCGATT
CTGGAATCCGAAAATGGTTAAAGGCGTGATTGACTTTATTCGTCCTGAAGAGTGTTTACCGGAACATTGTAAGCCGATTC
ACGAAATGAGCATGAAGCCTTTTGGTATTGATACCAATCAACGTTCTGTCATTAAAGAAGAGGAGGTTTGGCAATGA

Upstream 100 bases:

>100_bases
CGGGATTCTGGCTCTTTATGAAATTTTTTATGATTCCCGTTTTGGTGTGAATATTAACTCAACCATTTCACCAGACATGC
TTATACAGTGAGGTACATAC

Downstream 100 bases:

>100_bases
GTTGGATGCAACGACTTTGTGAAACGTATGACAATGCCCATAATAAAGTTGGGGATTATAACGACGATGCAATTCTTTTG
CCGTTGTATCACACTACGAT

Product: CRISPR-associated Csd1 family protein

Products: NA

Alternate protein names: CRISPR-Associated Cas5 Family Protein; CRISPR-Associated Family; CRISPR-Associated Cas5d Family Protein; Cytoplasmic Protein; CRISPR-Associated Protein; Cas5 Family CRISPR-Associated Protein; Crispr-Associated Protein; CRISPR-Associated Csd1 Family Protein; CRISPR-Associated D; CRISPR-Associated Protein Csd5d Family

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKNSIEFKVYGREAMFTDPVSRIGGEKCSYHIPTYEALKGIVKSIYWKPTIIWVVDKVRVMKPIRTKTKCLKPLKYHEKG
NSLAIYNYLCDVEYQVLAHFEWNLHRPELAQDCINGKHYSVALRALDKGGRQDIFLGTRECQGYVEPCKFGEGKGEYDNI
SELAFGFTFHGFDYPDETGQKMFRSRFWNPKMVKGVIDFIRPEECLPEHCKPIHEMSMKPFGIDTNQRSVIKEEEVWQ

Sequences:

>Translated_238_residues
MKNSIEFKVYGREAMFTDPVSRIGGEKCSYHIPTYEALKGIVKSIYWKPTIIWVVDKVRVMKPIRTKTKCLKPLKYHEKG
NSLAIYNYLCDVEYQVLAHFEWNLHRPELAQDCINGKHYSVALRALDKGGRQDIFLGTRECQGYVEPCKFGEGKGEYDNI
SELAFGFTFHGFDYPDETGQKMFRSRFWNPKMVKGVIDFIRPEECLPEHCKPIHEMSMKPFGIDTNQRSVIKEEEVWQ
>Mature_238_residues
MKNSIEFKVYGREAMFTDPVSRIGGEKCSYHIPTYEALKGIVKSIYWKPTIIWVVDKVRVMKPIRTKTKCLKPLKYHEKG
NSLAIYNYLCDVEYQVLAHFEWNLHRPELAQDCINGKHYSVALRALDKGGRQDIFLGTRECQGYVEPCKFGEGKGEYDNI
SELAFGFTFHGFDYPDETGQKMFRSRFWNPKMVKGVIDFIRPEECLPEHCKPIHEMSMKPFGIDTNQRSVIKEEEVWQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27791; Mature: 27791

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSIEFKVYGREAMFTDPVSRIGGEKCSYHIPTYEALKGIVKSIYWKPTIIWVVDKVRV
CCCCEEEEEECCCCHHCCHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCEEEEEEHHHHH
MKPIRTKTKCLKPLKYHEKGNSLAIYNYLCDVEYQVLAHFEWNLHRPELAQDCINGKHYS
HHHHHHHHHHHCHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCCCE
VALRALDKGGRQDIFLGTRECQGYVEPCKFGEGKGEYDNISELAFGFTFHGFDYPDETGQ
EHEEEHHCCCCCEEEEEHHHHCCCCCHHCCCCCCCCCCCHHHHHHHEEECCCCCCCHHHH
KMFRSRFWNPKMVKGVIDFIRPEECLPEHCKPIHEMSMKPFGIDTNQRSVIKEEEVWQ
HHHHHHCCCHHHHHHHHHHHCCHHHCHHHCCHHHHCCCCCCCCCCCCHHHHCHHHCCC
>Mature Secondary Structure
MKNSIEFKVYGREAMFTDPVSRIGGEKCSYHIPTYEALKGIVKSIYWKPTIIWVVDKVRV
CCCCEEEEEECCCCHHCCHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCEEEEEEHHHHH
MKPIRTKTKCLKPLKYHEKGNSLAIYNYLCDVEYQVLAHFEWNLHRPELAQDCINGKHYS
HHHHHHHHHHHCHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCCCE
VALRALDKGGRQDIFLGTRECQGYVEPCKFGEGKGEYDNISELAFGFTFHGFDYPDETGQ
EHEEEHHCCCCCEEEEEHHHHCCCCCHHCCCCCCCCCCCHHHHHHHEEECCCCCCCHHHH
KMFRSRFWNPKMVKGVIDFIRPEECLPEHCKPIHEMSMKPFGIDTNQRSVIKEEEVWQ
HHHHHHCCCHHHHHHHHHHHCCHHHCHHHCCHHHHCCCCCCCCCCCCHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA