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The map label for this gene is 78188975

Identifier: 78188975

GI number: 78188975

Start: 1346873

End: 1348801

Strand: Reverse

Name: 78188975

Synonym: Cag_1008

Alternate gene names: NA

Gene position: 1348801-1346873 (Counterclockwise)

Preceding gene: 78188976

Following gene: 78188974

Centisome position: 52.44

GC content: 40.8

Gene sequence:

>1929_bases
ATGAGTTGGATGCAACGACTTTGTGAAACGTATGACAATGCCCATAATAAAGTTGGGGATTATAACGACGATGCAATTCT
TTTGCCGTTGTATCACACTACGATGACCTGCAACATCGAAGTTACGCTTAATGAAAATGGAGAATTTGTACAGGCCAAGC
CTTCTGAGAAAAAGAAAATAATCATCATTCCTTGTACAGAATCTTCTGCTGGGCGTTCTGGTGATAGCCCAAAAGCACAC
CCACTTTCTGACAAGTTACAATATATCGCAGGTGATTTTTCACACTATGGAGGTGAGGTTACCAGCGGTTTTAAAAACGA
TCCTGAAGAGCCATTCCGACAACTCTATCAGCAGTTGACGGAATGGTCTGAAGCATCTCCTGATAAATACAAACTTCGTG
CGGTAAAGCGTTATTTAGAGAAGAAACGTCTGATCGAAGACCTCATCGAAGCAGGTGTTCTTCATCTTGATGAAGATAGA
AAGTTGCTAAAAAAATGGGACAGTAAAGGAAAGAAGAAAACGGATAAACCACCCATATTTGAAAGTATTACAAATGTCAA
TGACGCTACGGTTGGATGGCATGTTGAAAAAAAAGGGGAACCCACTGAGCCATTGTGGAAAGATAAAGATATACATAAGG
CTTGGCAGGCTTACTACGAAAGCAGAAAAATCAACCCCAAACTGTGTTTTATAAGTGGTAGATCAGATGTTGCGCCTGCC
GAACAGCATCCAAAGAAGATTCTGCAAGGAGCAAGCAACGCAAAACTTATCTCCAGCAATGACAAAAAGGGGTTCACCTT
TCGAGGAAGGTTTACTACGGCTGAAGAGGCTTGTACAATTAGCGCTGTAGCCAGCCAGAAAATGCACAATGCCTTATCAT
GGCTTGTCGAGAGGCAAGGTTATAACAAAGGAACTCTAAATATTGTTGCATGGGCAGTATCAGGAGGGAACATACCTGAT
CCTATGAAAGAAACAGCCCCTTATGATTATGATGATTTAGGTGATGATTACAATGCTGCGCAAGCCTTTGGGTTAGCATT
TAAAAAACGCATTGCTGGTTATCGTGCAAGAATTAGTTCAACTGATAGCATTTTAGTGCTTGCTTTTGATGCGGCTACTT
CTGGACGTGCCTCCTTAACCTATTACAGAGAACTTACTGGTTCTGACTTCCTCGATAGATTAGAACGTTGGTATGCCCGT
CACGAATGGCTTTATTCTAAACCTGAGAAAAAGCGCGGATTTTTTATTCAGGTTCGGTCCCCTGAACAAATTGCCAAAGA
CATCTATGAACATAATAAGACAGAAGATAAGGAGAAAAAAACGGATGATATTATCCGTTCAGTTGTTCAACGGCTTTTGC
CATGCATCATTGATGGGCAGAAAGTACCTTTTGACTTGGTTGTTGCCGCTCGAAACAGAGCATCAAAACCCATGAGTTTT
AAGAAGTATAAAGAAGATTGGAAGAATAGAGAGGATTGGGAAAATACTTTGAGTACTGCATGTGCATTATTTAGAGGTTA
TTATTACACAAACTTTCAGGAGGAATACAGTATGAGTTTAGACCCAAATCGAACCACACGGGATTATCTTTATGGTAGAT
TACTTGCTGTTGCGGAATCGCTTGAAAAGTCAGCACTGGGGCTTGCTGATGAAGGACGCAGTTCAACGGCAGAACGTTAT
ATGCAGCAATTTGCTGAACGCCCGTTTAACACATGGAAAACGATTGAGCTCTCACTTTCACCATATATAGCAAGGCTTCA
GTCTAATGCTCCAGGACTAAAAAAATTCTATACCGATAAGCTCGATGAAATTCATTGCCTTTTCAACCCTGATGATTTTG
AAAACAATGAACCACTGACTGGTGAGTTTCTTCTTGGATATCACTGCCAAAGACTTAAGAATTATGAAGGAAGCTCGAAG
AAAGACTAA

Upstream 100 bases:

>100_bases
GTTTACCGGAACATTGTAAGCCGATTCACGAAATGAGCATGAAGCCTTTTGGTATTGATACCAATCAACGTTCTGTCATT
AAAGAAGAGGAGGTTTGGCA

Downstream 100 bases:

>100_bases
TTACTATAACTAACCCTATTGAAAAAACATGAGTACTCTTAACCAAAAGATTGACTTTGCTATTATTATGCGTGTAACCA
ACGCAAACCCAAATGGTGAT

Product: CRISPR-associated Csd1 family protein

Products: NA

Alternate protein names: CRISPR-Associated RAMP Csd1 Family Protein; CRISPR-Associated Csd1 Family Protein; Cytoplasmic Protein; CRISPR-Associated Protein; Csd1 Family CRISPR-Associated Protein; Crispr-Associated Protein; CRISPR-Associated Ramp Csd1 Family Protein

Number of amino acids: Translated: 642; Mature: 641

Protein sequence:

>642_residues
MSWMQRLCETYDNAHNKVGDYNDDAILLPLYHTTMTCNIEVTLNENGEFVQAKPSEKKKIIIIPCTESSAGRSGDSPKAH
PLSDKLQYIAGDFSHYGGEVTSGFKNDPEEPFRQLYQQLTEWSEASPDKYKLRAVKRYLEKKRLIEDLIEAGVLHLDEDR
KLLKKWDSKGKKKTDKPPIFESITNVNDATVGWHVEKKGEPTEPLWKDKDIHKAWQAYYESRKINPKLCFISGRSDVAPA
EQHPKKILQGASNAKLISSNDKKGFTFRGRFTTAEEACTISAVASQKMHNALSWLVERQGYNKGTLNIVAWAVSGGNIPD
PMKETAPYDYDDLGDDYNAAQAFGLAFKKRIAGYRARISSTDSILVLAFDAATSGRASLTYYRELTGSDFLDRLERWYAR
HEWLYSKPEKKRGFFIQVRSPEQIAKDIYEHNKTEDKEKKTDDIIRSVVQRLLPCIIDGQKVPFDLVVAARNRASKPMSF
KKYKEDWKNREDWENTLSTACALFRGYYYTNFQEEYSMSLDPNRTTRDYLYGRLLAVAESLEKSALGLADEGRSSTAERY
MQQFAERPFNTWKTIELSLSPYIARLQSNAPGLKKFYTDKLDEIHCLFNPDDFENNEPLTGEFLLGYHCQRLKNYEGSSK
KD

Sequences:

>Translated_642_residues
MSWMQRLCETYDNAHNKVGDYNDDAILLPLYHTTMTCNIEVTLNENGEFVQAKPSEKKKIIIIPCTESSAGRSGDSPKAH
PLSDKLQYIAGDFSHYGGEVTSGFKNDPEEPFRQLYQQLTEWSEASPDKYKLRAVKRYLEKKRLIEDLIEAGVLHLDEDR
KLLKKWDSKGKKKTDKPPIFESITNVNDATVGWHVEKKGEPTEPLWKDKDIHKAWQAYYESRKINPKLCFISGRSDVAPA
EQHPKKILQGASNAKLISSNDKKGFTFRGRFTTAEEACTISAVASQKMHNALSWLVERQGYNKGTLNIVAWAVSGGNIPD
PMKETAPYDYDDLGDDYNAAQAFGLAFKKRIAGYRARISSTDSILVLAFDAATSGRASLTYYRELTGSDFLDRLERWYAR
HEWLYSKPEKKRGFFIQVRSPEQIAKDIYEHNKTEDKEKKTDDIIRSVVQRLLPCIIDGQKVPFDLVVAARNRASKPMSF
KKYKEDWKNREDWENTLSTACALFRGYYYTNFQEEYSMSLDPNRTTRDYLYGRLLAVAESLEKSALGLADEGRSSTAERY
MQQFAERPFNTWKTIELSLSPYIARLQSNAPGLKKFYTDKLDEIHCLFNPDDFENNEPLTGEFLLGYHCQRLKNYEGSSK
KD
>Mature_641_residues
SWMQRLCETYDNAHNKVGDYNDDAILLPLYHTTMTCNIEVTLNENGEFVQAKPSEKKKIIIIPCTESSAGRSGDSPKAHP
LSDKLQYIAGDFSHYGGEVTSGFKNDPEEPFRQLYQQLTEWSEASPDKYKLRAVKRYLEKKRLIEDLIEAGVLHLDEDRK
LLKKWDSKGKKKTDKPPIFESITNVNDATVGWHVEKKGEPTEPLWKDKDIHKAWQAYYESRKINPKLCFISGRSDVAPAE
QHPKKILQGASNAKLISSNDKKGFTFRGRFTTAEEACTISAVASQKMHNALSWLVERQGYNKGTLNIVAWAVSGGNIPDP
MKETAPYDYDDLGDDYNAAQAFGLAFKKRIAGYRARISSTDSILVLAFDAATSGRASLTYYRELTGSDFLDRLERWYARH
EWLYSKPEKKRGFFIQVRSPEQIAKDIYEHNKTEDKEKKTDDIIRSVVQRLLPCIIDGQKVPFDLVVAARNRASKPMSFK
KYKEDWKNREDWENTLSTACALFRGYYYTNFQEEYSMSLDPNRTTRDYLYGRLLAVAESLEKSALGLADEGRSSTAERYM
QQFAERPFNTWKTIELSLSPYIARLQSNAPGLKKFYTDKLDEIHCLFNPDDFENNEPLTGEFLLGYHCQRLKNYEGSSKK
D

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73685; Mature: 73553

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWMQRLCETYDNAHNKVGDYNDDAILLPLYHTTMTCNIEVTLNENGEFVQAKPSEKKKI
CHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEECCCCCCEE
IIIPCTESSAGRSGDSPKAHPLSDKLQYIAGDFSHYGGEVTSGFKNDPEEPFRQLYQQLT
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
EWSEASPDKYKLRAVKRYLEKKRLIEDLIEAGVLHLDEDRKLLKKWDSKGKKKTDKPPIF
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHCCCCCCCCCCHH
ESITNVNDATVGWHVEKKGEPTEPLWKDKDIHKAWQAYYESRKINPKLCFISGRSDVAPA
HHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
EQHPKKILQGASNAKLISSNDKKGFTFRGRFTTAEEACTISAVASQKMHNALSWLVERQG
HHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
YNKGTLNIVAWAVSGGNIPDPMKETAPYDYDDLGDDYNAAQAFGLAFKKRIAGYRARISS
CCCCCEEEEEEEECCCCCCCCHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TDSILVLAFDAATSGRASLTYYRELTGSDFLDRLERWYARHEWLYSKPEKKRGFFIQVRS
CCCEEEEEEECCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
PEQIAKDIYEHNKTEDKEKKTDDIIRSVVQRLLPCIIDGQKVPFDLVVAARNRASKPMSF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCHH
KKYKEDWKNREDWENTLSTACALFRGYYYTNFQEEYSMSLDPNRTTRDYLYGRLLAVAES
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LEKSALGLADEGRSSTAERYMQQFAERPFNTWKTIELSLSPYIARLQSNAPGLKKFYTDK
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHC
LDEIHCLFNPDDFENNEPLTGEFLLGYHCQRLKNYEGSSKKD
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SWMQRLCETYDNAHNKVGDYNDDAILLPLYHTTMTCNIEVTLNENGEFVQAKPSEKKKI
HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEECCCCCCEE
IIIPCTESSAGRSGDSPKAHPLSDKLQYIAGDFSHYGGEVTSGFKNDPEEPFRQLYQQLT
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
EWSEASPDKYKLRAVKRYLEKKRLIEDLIEAGVLHLDEDRKLLKKWDSKGKKKTDKPPIF
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHCCCCCCCCCCHH
ESITNVNDATVGWHVEKKGEPTEPLWKDKDIHKAWQAYYESRKINPKLCFISGRSDVAPA
HHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
EQHPKKILQGASNAKLISSNDKKGFTFRGRFTTAEEACTISAVASQKMHNALSWLVERQG
HHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
YNKGTLNIVAWAVSGGNIPDPMKETAPYDYDDLGDDYNAAQAFGLAFKKRIAGYRARISS
CCCCCEEEEEEEECCCCCCCCHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TDSILVLAFDAATSGRASLTYYRELTGSDFLDRLERWYARHEWLYSKPEKKRGFFIQVRS
CCCEEEEEEECCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
PEQIAKDIYEHNKTEDKEKKTDDIIRSVVQRLLPCIIDGQKVPFDLVVAARNRASKPMSF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCHH
KKYKEDWKNREDWENTLSTACALFRGYYYTNFQEEYSMSLDPNRTTRDYLYGRLLAVAES
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LEKSALGLADEGRSSTAERYMQQFAERPFNTWKTIELSLSPYIARLQSNAPGLKKFYTDK
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHC
LDEIHCLFNPDDFENNEPLTGEFLLGYHCQRLKNYEGSSKKD
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA