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The map label for this gene is 78188977

Identifier: 78188977

GI number: 78188977

Start: 1349524

End: 1351998

Strand: Reverse

Name: 78188977

Synonym: Cag_1010

Alternate gene names: NA

Gene position: 1351998-1349524 (Counterclockwise)

Preceding gene: 78188978

Following gene: 78188976

Centisome position: 52.56

GC content: 40.16

Gene sequence:

>2475_bases
ATGGATGCCTTCGATAACAAATTATATGCTCATACGCTCGAAGGTGTTAAGAATAAATCGCAGTGGCAAACACTTAGAGA
GCATGCGTTGTCAACAGCTCATTTGGCTTCGGATTATGCGACTTCATTTGGGTTAGCGGAATGTGGCTACTGGCTTGGAC
TTATTCACGATCTTGGTAAAAGTTTGCCTCAATTCCAGCAGCGTTTGGAAGATGATCGGGTCAAGGCAGATCACAAACAT
GCTGGCGGTCTCTTTCTGTGGGATAAGCTCAATAATGGCACCAAACCTTCTCACTTGGCAGCACAGTGCTTAGCCTTGTG
CGTTATTTCCCATCACGGTGGTTTGGTTGATTGTTTAAATCAACTCGGCGAAGACAACTTTATTAATACGATAGAAAACA
AGCTGTATCAGGCAAATTTGAAGGATTCATTAGAGAACTTGCAGCTTGATACTGAACTTGAAGACAATATCAAGAAAATT
TCAGGAGCACGAAGCCTTGTACAAGATGAAATAGATTTCTTTTTCCAAAATATTTTACAGCAAGCAAAAAAATACTGGCC
GACTGAGGATGATAAAAACAAGCGAAAAAAGCTGGAGCTTTTCAGAATAGGCTTGATGACAAAAATGCTTTTTAGTTGTC
TTATAGATGCTGATCATACCGACACCGCCAACTTTCATGACGAAGAGCGCAAGAATAAAAATCTGCCACATTTGCCAAAA
TGGGATGAATTGAGAGATATGGTGGAACGGTATCTGGAAACGCTGCCACAAACATCTTCAGTGGATATTGAACGAAAAAG
AATCTCTGATAAATGTATTCAAGCCTCAGTCTGCGAATCAGGAACTTACTTGCTCACTGTGCCGACTGGAGGCGGAAAAA
CCCTCGCAAGCATGCGGTTCGCTTTGCATCATGCCGTCAACAGAGAGCCATATATCCCTTTCAAACGTATCATCTATGTT
ATCCCTTATACAACCATCATTGAGCAGAATGCACAAGCTATAAGGAAAGTGTTTGTATCACAACTTAACGAAGATGTATT
AAATGAGATGATTCTTGAGAGCCATTCCAATGTTCTGCCAAATGAAGAAAACCGAAATAACCGTGTGCTTGCAGAAAACT
GGGATGCGCCAATAATTTTTACGACTAATGTTCAATTTCTTGAGGCTTTTTACGGTGTAGGAACCCGTAATGCGCGAAAA
TTGCACAACCTTGCAAACTCTATCATCATTTTTGATGAAGCACAAACATTACCAGTGCGCTGCCTCCATCTATTTTGTCA
TGCCGTGAATTTCCTTGTTGAACATTGCAACTGCACGGCTATTTTATGCACTGCAACACAACCTCTTTTGCATGAAATAC
CGGCAGAGCATGGCGCTCTATGGCTCTCCAAAAATTTTCAAATTCTTCCCGATAAATTTCGTAAGGATTCAGCAGATTCA
CTCAAACGAGTAACTGTAATTGATGAATGCAAGCCTCAAGGATGGAGACTTGAAGAAGTTGCTGACAAGGTGTCATGTAT
TCACAAACAAGGAAATAGTTGCATCATTATTCTCAATACGAAAGCTGACACAAGGGAACTGTACACGATACTCCGCAAAC
GTCATGGTGAAGAGTTAACGTATCACCTAAGCACAGCCATGTGTGCCGCTCATAGGATGGATATTCTATCAGAAGTAAAA
ACACTTCTTCGTAATAATCAACCTGTTATTTGTGTTAGCACACAATTAATAGAAGCTGGAATAGATATTGATTTTGATAC
GGGTATCCGTGCTTTGGCAGGTATAGATTCAATAGCTCAGGCTGCCGGACGTATAAATAGAAATGGTAAAAAGCCGGCTG
ATTCTGCTCTATATATCCAAAATATCTCTGGTGAAAACCTTAAAAACCTGCAAGACATTGCGGTTGCTCAAGTTGAAGCC
CAAAAAGTTCTTCGTGAGTTCAAAGAAAATCCAAATGAGTTCGGCAATAGTCTTCTCTCAGAAGCCGTTATGAAGCGGTA
CTTTAAATTCTACATCTTCAACAGGAAAGATGAGATGACTTACAAGATCAAATCAGATAATCTTGTGAATCTACTTTCTT
CAAATGTAAACGCGGTTGGCGAATACAAGCGAACGCACAAAAACCAGCCTTATCCTAATATCTTACGTCAATCTTTTGCA
ACAGCCGCGAGGGAGTTCAAGGTCATTAATTCAGATACACAAGGCATTTTTGTTCCCTACAACGACGAAGCAAGAGGATT
ACTAAATCAACTTCGCAACACAAAATCTTCAGAATTTCAGCGCTATTTATTTCGCCGGTTACAACGTTACACCGTCAATG
TTTATCCTTATATGCTCAAAAAATTAACGAAGATACATGCGTTAGAACCCTTGTGCGAAAACAGCGGGATTCTGGCTCTT
TATGAAATTTTTTATGATTCCCGTTTTGGTGTGAATATTAACTCAACCATTTCACCAGACATGCTTATACAGTGA

Upstream 100 bases:

>100_bases
GGCTCTTATGATGTGCATGAATTAAAGGATCATTTGCAAGGTGTTGCTCGAAGGGCGGCTCAATTTGCAGAGGAATTAAT
GGTAAGAAAAGCAATGCTGT

Downstream 100 bases:

>100_bases
GGTACATACATGAAAAATAGTATTGAATTTAAGGTTTATGGACGGGAAGCTATGTTTACCGACCCAGTTTCCAGAATAGG
AGGAGAAAAGTGCAGTTATC

Product: CRISPR-associated helicase Cas3 family protein

Products: NA

Alternate protein names: Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein; CRISPR-Associated Helicase Cas3 Domain Protein; CRISPR-Associated HD Domain Protein; ATP-Dependent RNA Helicase; CRISPR-Associated Helicase Cas3 Domain-Containing Protein; CRISPR-Associated Helicase; DEAD/DEAH Box Helicase Domain-Containing Protein; Crispr-Associated Helicase Cas3 Domain Protein; Crispr-Associated Hd Domain Protein; Helicases; CRISPR-Associated Helicase Cas3 Core; CRISPR-Associated Helicase Cas3 Family; Helicase-Like Protein; Cas3 Family CRISPR-Associated Helicase; Helicases-Like Protein; CRISPR-Associated Helicase Cas3 Protein; CRISPR-Associated HD Domain-Containing Protein; ATP-Dependent RNA Helicase SrmB

Number of amino acids: Translated: 824; Mature: 824

Protein sequence:

>824_residues
MDAFDNKLYAHTLEGVKNKSQWQTLREHALSTAHLASDYATSFGLAECGYWLGLIHDLGKSLPQFQQRLEDDRVKADHKH
AGGLFLWDKLNNGTKPSHLAAQCLALCVISHHGGLVDCLNQLGEDNFINTIENKLYQANLKDSLENLQLDTELEDNIKKI
SGARSLVQDEIDFFFQNILQQAKKYWPTEDDKNKRKKLELFRIGLMTKMLFSCLIDADHTDTANFHDEERKNKNLPHLPK
WDELRDMVERYLETLPQTSSVDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRFALHHAVNREPYIPFKRIIYV
IPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLPNEENRNNRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARK
LHNLANSIIIFDEAQTLPVRCLHLFCHAVNFLVEHCNCTAILCTATQPLLHEIPAEHGALWLSKNFQILPDKFRKDSADS
LKRVTVIDECKPQGWRLEEVADKVSCIHKQGNSCIIILNTKADTRELYTILRKRHGEELTYHLSTAMCAAHRMDILSEVK
TLLRNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQAAGRINRNGKKPADSALYIQNISGENLKNLQDIAVAQVEA
QKVLREFKENPNEFGNSLLSEAVMKRYFKFYIFNRKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFA
TAAREFKVINSDTQGIFVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLKKLTKIHALEPLCENSGILAL
YEIFYDSRFGVNINSTISPDMLIQ

Sequences:

>Translated_824_residues
MDAFDNKLYAHTLEGVKNKSQWQTLREHALSTAHLASDYATSFGLAECGYWLGLIHDLGKSLPQFQQRLEDDRVKADHKH
AGGLFLWDKLNNGTKPSHLAAQCLALCVISHHGGLVDCLNQLGEDNFINTIENKLYQANLKDSLENLQLDTELEDNIKKI
SGARSLVQDEIDFFFQNILQQAKKYWPTEDDKNKRKKLELFRIGLMTKMLFSCLIDADHTDTANFHDEERKNKNLPHLPK
WDELRDMVERYLETLPQTSSVDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRFALHHAVNREPYIPFKRIIYV
IPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLPNEENRNNRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARK
LHNLANSIIIFDEAQTLPVRCLHLFCHAVNFLVEHCNCTAILCTATQPLLHEIPAEHGALWLSKNFQILPDKFRKDSADS
LKRVTVIDECKPQGWRLEEVADKVSCIHKQGNSCIIILNTKADTRELYTILRKRHGEELTYHLSTAMCAAHRMDILSEVK
TLLRNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQAAGRINRNGKKPADSALYIQNISGENLKNLQDIAVAQVEA
QKVLREFKENPNEFGNSLLSEAVMKRYFKFYIFNRKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFA
TAAREFKVINSDTQGIFVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLKKLTKIHALEPLCENSGILAL
YEIFYDSRFGVNINSTISPDMLIQ
>Mature_824_residues
MDAFDNKLYAHTLEGVKNKSQWQTLREHALSTAHLASDYATSFGLAECGYWLGLIHDLGKSLPQFQQRLEDDRVKADHKH
AGGLFLWDKLNNGTKPSHLAAQCLALCVISHHGGLVDCLNQLGEDNFINTIENKLYQANLKDSLENLQLDTELEDNIKKI
SGARSLVQDEIDFFFQNILQQAKKYWPTEDDKNKRKKLELFRIGLMTKMLFSCLIDADHTDTANFHDEERKNKNLPHLPK
WDELRDMVERYLETLPQTSSVDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRFALHHAVNREPYIPFKRIIYV
IPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLPNEENRNNRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARK
LHNLANSIIIFDEAQTLPVRCLHLFCHAVNFLVEHCNCTAILCTATQPLLHEIPAEHGALWLSKNFQILPDKFRKDSADS
LKRVTVIDECKPQGWRLEEVADKVSCIHKQGNSCIIILNTKADTRELYTILRKRHGEELTYHLSTAMCAAHRMDILSEVK
TLLRNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQAAGRINRNGKKPADSALYIQNISGENLKNLQDIAVAQVEA
QKVLREFKENPNEFGNSLLSEAVMKRYFKFYIFNRKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFA
TAAREFKVINSDTQGIFVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLKKLTKIHALEPLCENSGILAL
YEIFYDSRFGVNINSTISPDMLIQ

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94202; Mature: 94202

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAFDNKLYAHTLEGVKNKSQWQTLREHALSTAHLASDYATSFGLAECGYWLGLIHDLGK
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SLPQFQQRLEDDRVKADHKHAGGLFLWDKLNNGTKPSHLAAQCLALCVISHHGGLVDCLN
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
QLGEDNFINTIENKLYQANLKDSLENLQLDTELEDNIKKISGARSLVQDEIDFFFQNILQ
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAKKYWPTEDDKNKRKKLELFRIGLMTKMLFSCLIDADHTDTANFHDEERKNKNLPHLPK
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCC
WDELRDMVERYLETLPQTSSVDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRF
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
ALHHAVNREPYIPFKRIIYVIPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLP
HHHHHCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NEENRNNRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARKLHNLANSIIIFDEAQTLPVR
CCCCCCCEEEEECCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCHHHH
CLHLFCHAVNFLVEHCNCTAILCTATQPLLHEIPAEHGALWLSKNFQILPDKFRKDSADS
HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCHHHCEEEEECCCCCCCHHHCCCCHHH
LKRVTVIDECKPQGWRLEEVADKVSCIHKQGNSCIIILNTKADTRELYTILRKRHGEELT
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHE
YHLSTAMCAAHRMDILSEVKTLLRNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQ
EHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHH
AAGRINRNGKKPADSALYIQNISGENLKNLQDIAVAQVEAQKVLREFKENPNEFGNSLLS
HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EAVMKRYFKFYIFNRKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFA
HHHHHHHHHHHEECCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
TAAREFKVINSDTQGIFVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLK
HHHHHHHEECCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLTKIHALEPLCENSGILALYEIFYDSRFGVNINSTISPDMLIQ
HHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDAFDNKLYAHTLEGVKNKSQWQTLREHALSTAHLASDYATSFGLAECGYWLGLIHDLGK
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SLPQFQQRLEDDRVKADHKHAGGLFLWDKLNNGTKPSHLAAQCLALCVISHHGGLVDCLN
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
QLGEDNFINTIENKLYQANLKDSLENLQLDTELEDNIKKISGARSLVQDEIDFFFQNILQ
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAKKYWPTEDDKNKRKKLELFRIGLMTKMLFSCLIDADHTDTANFHDEERKNKNLPHLPK
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCC
WDELRDMVERYLETLPQTSSVDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRF
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
ALHHAVNREPYIPFKRIIYVIPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLP
HHHHHCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NEENRNNRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARKLHNLANSIIIFDEAQTLPVR
CCCCCCCEEEEECCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCHHHH
CLHLFCHAVNFLVEHCNCTAILCTATQPLLHEIPAEHGALWLSKNFQILPDKFRKDSADS
HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCHHHCEEEEECCCCCCCHHHCCCCHHH
LKRVTVIDECKPQGWRLEEVADKVSCIHKQGNSCIIILNTKADTRELYTILRKRHGEELT
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHE
YHLSTAMCAAHRMDILSEVKTLLRNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQ
EHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHH
AAGRINRNGKKPADSALYIQNISGENLKNLQDIAVAQVEAQKVLREFKENPNEFGNSLLS
HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EAVMKRYFKFYIFNRKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFA
HHHHHHHHHHHEECCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
TAAREFKVINSDTQGIFVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLK
HHHHHHHEECCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLTKIHALEPLCENSGILALYEIFYDSRFGVNINSTISPDMLIQ
HHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA