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The map label for this gene is nodB [H]

Identifier: 78067564

GI number: 78067564

Start: 3239649

End: 3240542

Strand: Direct

Name: nodB [H]

Synonym: Bcep18194_A6095

Alternate gene names: 78067564

Gene position: 3239649-3240542 (Clockwise)

Preceding gene: 78067563

Following gene: 78067565

Centisome position: 87.7

GC content: 74.72

Gene sequence:

>894_bases
ATGAGCGCGCCGTCGTCCGTTCCGTCGCGACAGCCCGGCGATGCGCGCCGCTGGAAGCCGACGCCGCTGATCGCGGGCAC
GGCCGCGCTGCATGCGGGCGCGGCCGCCGCCGTCGTCGCGCAGCCGGCCGCGTGGCCGTGGGCGGTCGGTGGCGTGGTCG
CGTCCCATCTTGCGCTGACCGCCGCCGGCCTGTGGCCGCGCAGCACGCTGCTCGGCCCGAACTGGACGCACCTGCCACCG
GGTGCGGGCCGCCGCATCGCGCTGACGATCGACGACGGCCCGGACCCGGACGTCACGCCGCGCGTGCTCGACCTGCTCGA
CCGTTACGATGCGCGCGCGACGTTCTTCTGCATCGGCGATCTCGCGCGCCGTCATCCGCGCTGGATCGAGGCGATCGTCG
CGCGCGGTCACGCGATCGAAAACCACAGCCAGCGGCACCGGCACACATTCTCGCTGTCGGGGCCCGCCGCGCTGCGGCGC
GAGATCGCGGCCGCGCAGCAGACGCTGACCGAGCTCACCGGCACGCGCCCGCTGTTCTTCCGCGCGCCGGCCGGCCTGCG
CAACCCGTTTCTCGAACCGGTGCTGTGCGAACTCGGCCTGCAGCTGGCCAGCTGGACGCGGCGCGGTTTCGACACGCGCG
CACGCGATGCCGCGACCGTCACGCGCCGCCTGCTGCACGGTCTCGCGGCACGCGACATCCTGCTCGTGCACGACGGCCAT
GCGGCGCGTGACGCGCGCGGTGAACCGGTCGTGCTCGACGTGCTGCAGGCGGTGCTGCGCGCGGCCGTCGATGCGCAACT
GCACTGGACCACGCTGCGCGCGGCGCTCGCGCCGGAACCGCCCGGCGGGCCGGCCGAGCCGGCCGGCTCGGCCCACCCGT
TTGATAAAATCTGA

Upstream 100 bases:

>100_bases
CCGTCGGCCCGGGCGCGATGCTCGCGCTCGCGTTCGCGGCGATTCTTGCGCCGCGCGAGGCTGCGTCCGCAACCGGCAAC
CGTCATCAAGGAGGCCGCGC

Downstream 100 bases:

>100_bases
CTTCGAGCGGCGCGCCTGCCAGCCCTGCTGCGGCGCCCGTTCCGGCCACCGGATGCGACCCTCGTGAAACCTCTCCTGCT
CTCGCACTTCACCGCCACCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSAPSSVPSRQPGDARRWKPTPLIAGTAALHAGAAAAVVAQPAAWPWAVGGVVASHLALTAAGLWPRSTLLGPNWTHLPP
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPRWIEAIVARGHAIENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTELTGTRPLFFRAPAGLRNPFLEPVLCELGLQLASWTRRGFDTRARDAATVTRRLLHGLAARDILLVHDGH
AARDARGEPVVLDVLQAVLRAAVDAQLHWTTLRAALAPEPPGGPAEPAGSAHPFDKI

Sequences:

>Translated_297_residues
MSAPSSVPSRQPGDARRWKPTPLIAGTAALHAGAAAAVVAQPAAWPWAVGGVVASHLALTAAGLWPRSTLLGPNWTHLPP
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPRWIEAIVARGHAIENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTELTGTRPLFFRAPAGLRNPFLEPVLCELGLQLASWTRRGFDTRARDAATVTRRLLHGLAARDILLVHDGH
AARDARGEPVVLDVLQAVLRAAVDAQLHWTTLRAALAPEPPGGPAEPAGSAHPFDKI
>Mature_296_residues
SAPSSVPSRQPGDARRWKPTPLIAGTAALHAGAAAAVVAQPAAWPWAVGGVVASHLALTAAGLWPRSTLLGPNWTHLPPG
AGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPRWIEAIVARGHAIENHSQRHRHTFSLSGPAALRRE
IAAAQQTLTELTGTRPLFFRAPAGLRNPFLEPVLCELGLQLASWTRRGFDTRARDAATVTRRLLHGLAARDILLVHDGHA
ARDARGEPVVLDVLQAVLRAAVDAQLHWTTLRAALAPEPPGGPAEPAGSAHPFDKI

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 31840; Mature: 31708

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPSSVPSRQPGDARRWKPTPLIAGTAALHAGAAAAVVAQPAAWPWAVGGVVASHLALT
CCCCCCCCCCCCCCCCCCCCCCCEECHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
AAGLWPRSTLLGPNWTHLPPGAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGD
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHH
LARRHPRWIEAIVARGHAIENHSQRHRHTFSLSGPAALRREIAAAQQTLTELTGTRPLFF
HHHHCHHHHHHHHHHCCHHHCCHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
RAPAGLRNPFLEPVLCELGLQLASWTRRGFDTRARDAATVTRRLLHGLAARDILLVHDGH
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCC
AARDARGEPVVLDVLQAVLRAAVDAQLHWTTLRAALAPEPPGGPAEPAGSAHPFDKI
CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAPSSVPSRQPGDARRWKPTPLIAGTAALHAGAAAAVVAQPAAWPWAVGGVVASHLALT
CCCCCCCCCCCCCCCCCCCCCCEECHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
AAGLWPRSTLLGPNWTHLPPGAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGD
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHH
LARRHPRWIEAIVARGHAIENHSQRHRHTFSLSGPAALRREIAAAQQTLTELTGTRPLFF
HHHHCHHHHHHHHHHCCHHHCCHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
RAPAGLRNPFLEPVLCELGLQLASWTRRGFDTRARDAATVTRRLLHGLAARDILLVHDGH
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCC
AARDARGEPVVLDVLQAVLRAAVDAQLHWTTLRAALAPEPPGGPAEPAGSAHPFDKI
CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]