Click here to switch to the map view.

The map label for this gene is ycaR [C]

Identifier: 78067346

GI number: 78067346

Start: 2998698

End: 2998892

Strand: Direct

Name: ycaR [C]

Synonym: Bcep18194_A5877

Alternate gene names: 78067346

Gene position: 2998698-2998892 (Clockwise)

Preceding gene: 78067345

Following gene: 78067347

Centisome position: 81.17

GC content: 66.67

Gene sequence:

>195_bases
GTGGACGCTCGCCTGCTTGAAATCCTTGTGTGCCCTATCTGCAAAGGCCCGCTCCACTATGACCGTGCCGCGCAGGAGCT
GATCTGCAACGCGGACAAGCTCGCCTACCCGATCCGCGACGGCATCCCCGTGATGCTGGTCGACGAGGCGCGCCAGACCG
TCGAAGGCACGCCGGTCGACCCGGCCGGCCGCTAA

Upstream 100 bases:

>100_bases
GTAAAATTGGGCGCTTCCTGGCGCGACGCCCGACTGTGGGTTGTCCCCGTCGAAGCCGCGCTCGACCCTCGCCTCATTGC
CCTCGTTGTGGAGAAACTCC

Downstream 100 bases:

>100_bases
GCCGCCCGACCCGGCCCTCGCCGCGGCCCGTCCGCCGCGAGGGCGCCGAACCCCGCCGGGCGGCCCGCACCAGACGCGCC
GCCCGCTCCGCTCTTCTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MDARLLEILVCPICKGPLHYDRAAQELICNADKLAYPIRDGIPVMLVDEARQTVEGTPVDPAGR

Sequences:

>Translated_64_residues
MDARLLEILVCPICKGPLHYDRAAQELICNADKLAYPIRDGIPVMLVDEARQTVEGTPVDPAGR
>Mature_64_residues
MDARLLEILVCPICKGPLHYDRAAQELICNADKLAYPIRDGIPVMLVDEARQTVEGTPVDPAGR

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family [H]

Homologues:

Organism=Escherichia coli, GI1787146, Length=51, Percent_Identity=62.7450980392157, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005651 [H]

Pfam domain/function: PF03966 Trm112p [H]

EC number: NA

Molecular weight: Translated: 7032; Mature: 7032

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARLLEILVCPICKGPLHYDRAAQELICNADKLAYPIRDGIPVMLVDEARQTVEGTPVD
CCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCC
PAGR
CCCC
>Mature Secondary Structure
MDARLLEILVCPICKGPLHYDRAAQELICNADKLAYPIRDGIPVMLVDEARQTVEGTPVD
CCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCC
PAGR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA