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The map label for this gene is aidB [H]

Identifier: 78066938

GI number: 78066938

Start: 2552344

End: 2554095

Strand: Reverse

Name: aidB [H]

Synonym: Bcep18194_A5469

Alternate gene names: 78066938

Gene position: 2554095-2552344 (Counterclockwise)

Preceding gene: 78066941

Following gene: 78066937

Centisome position: 69.14

GC content: 70.66

Gene sequence:

>1752_bases
ATGAACGACACCGCTCGCACGCCGGACGCCGGCGCATCCAACATCCCCGACAGCCGGGGCATCAATTTCTTCACCGTCGA
TCCCGACCTCGGCGCGTTGCTGAAGCTGCATCTCGGCGATGCGCACTATGCCGAGCTGGAGCCGCGGCTGCGCGCGCTCG
GCGCACGCGTGTCGGGCGAGCTCGACGAATGGGCATCGCGCGCGGACAAGCACCCGCCCGTGCTCGAGCACCGCAACCGG
CGCGGCGAGGCCGTGCAGCGGATCGACAAGGATCCCGCGTATGTCGCGCTCGAACGCGTCGCGTATGCCGAACTCGGGCT
CGCGTCGCTGAGCCACGGGTCCGAATCGGTGCCGCCGCTCGTCAAGTACGCGCTGACGTTCCTGTTCGTGCAGGCGGAAT
TCGGGCTGTGCTGCCCGGTCAGCATGACCGATTCGCTGACGCGCACGCTGCGCCGCTTCGGCGATCCGGCGCTCGTCGCG
CGCTACCTGCCGATGCTTGCGTCGCGCGATTTCGACACGCTGTACCAGGGCGCGATGTTCATGACCGAGCAGGCGGCGGG
CTCCGACGTCGCCCGGATCGCGACGCGGGCGACGCGCGAGACGGACGCGCTCGGCGAGACCGTCTGGCGCCTGACTGGCG
ACAAGTGGTTCTGCTCGAACGCGGACGCCGATCTTGCGATGGTGCTCGCGCGGCCCGACGGCGCGCCGGACGGCATCAAG
GGCCTCGCGCTGTTCCTGCTGCCGAAGACGCTGCCGGACGGCACGCGCAACCGCTACCGGATCGTGCGCCTGAAGGACAA
GCTCGGCAGCCGTTCGATGGCGAGCGGCGAGATCGCGCTCGAAGGCGCGCAGGCGTACCTGATCGGCGAGATCGGCCGCG
GTTTTCACCAGATGGCCGACATGATCAACATGTCGCGGCTGTCGAACGGCGTGCGCGCGGCGGGGCTGATGCGGCGCGCG
CTGAACGAAGCGCTGCATGTCGCCGCGCATCGCGAGGCCTTCGGCCGCAAGCTGATCGAGATGCCGCTGATGCAGCGCCA
GTTGCTGAAGATGCTGCTGCCGGCCGAAGCCGCGCGCGCGATGTTCATGCAGATCGCGCTGCTGTTGCCGCAGGCCGATG
CGGGCGACGAGCAGGCCGCGCGCTGCGTGCGGATCCTGACACCGCTGATCAAGTTCCGCGCGTGCCGCGATGCGCGGCGC
GTGACCGGCGATGCGATGGAAGTGCGCGGCGGCACCGGCTACATCGAGGAATGGAGCGACGCGCGCGTCGTGCGCGATGC
GCATCTCGGCTCGATCTGGGAGGGCACGAGCAACATCGTCGCGCTCGACGTCGCGCGGGCCGCGCAGCGTGAGCAGGCGC
TCGATGCGCTGCGCGCGTTCCTCGGCGACCGCCTCGGCGCGGCGCCGCTGCCCGATGCGAGCCGCGCGGCGCTGCGGCGC
ATTCTCGCGCGCGCCTGCGACGCGCTTATGCGGGTCGCGGCCGAAGGCGACGACGCTCGCGTGCGCCAGGCCGCATCCGC
GCTGTACTACGCGAGCGCGGCCGTGCTGATGGCGTGCGAAGGCGTGCGGCTCGCGCCGGATTTCCGGCGGCTCGCGCTCG
CGCACCTGGTTGTGCGCCACAAGCTACTGCCGATCGATCCGCTCGCGCCGGCATCGCGCGACGACGAATCGGCCGCGTAC
GACGCACTGCTGCGCGGCACGCCGATCGCACTCGATACCGCGCTCGATCTGCTGCCGGAGGTCGAACGATGA

Upstream 100 bases:

>100_bases
CGATCGCGCGCCTACGCTCTGCGGAAGGCTTTGCACGGGACTGGCCGGGCGCTGCGGCGCCGCTTCCAGCCGACGTGCAG
GCAACCCAGGAGACGCACGC

Downstream 100 bases:

>100_bases
GCCTGACGCGTGGTGCTCTGGACGGCCTGAAGGTCGTCGACCTGAGCCGTGTGCTCGGCGGCCCGTACTGCACGCAGGCG
CTCGCCGACCACGGTGCGAC

Product: Acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MNDTARTPDAGASNIPDSRGINFFTVDPDLGALLKLHLGDAHYAELEPRLRALGARVSGELDEWASRADKHPPVLEHRNR
RGEAVQRIDKDPAYVALERVAYAELGLASLSHGSESVPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRRFGDPALVA
RYLPMLASRDFDTLYQGAMFMTEQAAGSDVARIATRATRETDALGETVWRLTGDKWFCSNADADLAMVLARPDGAPDGIK
GLALFLLPKTLPDGTRNRYRIVRLKDKLGSRSMASGEIALEGAQAYLIGEIGRGFHQMADMINMSRLSNGVRAAGLMRRA
LNEALHVAAHREAFGRKLIEMPLMQRQLLKMLLPAEAARAMFMQIALLLPQADAGDEQAARCVRILTPLIKFRACRDARR
VTGDAMEVRGGTGYIEEWSDARVVRDAHLGSIWEGTSNIVALDVARAAQREQALDALRAFLGDRLGAAPLPDASRAALRR
ILARACDALMRVAAEGDDARVRQAASALYYASAAVLMACEGVRLAPDFRRLALAHLVVRHKLLPIDPLAPASRDDESAAY
DALLRGTPIALDTALDLLPEVER

Sequences:

>Translated_583_residues
MNDTARTPDAGASNIPDSRGINFFTVDPDLGALLKLHLGDAHYAELEPRLRALGARVSGELDEWASRADKHPPVLEHRNR
RGEAVQRIDKDPAYVALERVAYAELGLASLSHGSESVPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRRFGDPALVA
RYLPMLASRDFDTLYQGAMFMTEQAAGSDVARIATRATRETDALGETVWRLTGDKWFCSNADADLAMVLARPDGAPDGIK
GLALFLLPKTLPDGTRNRYRIVRLKDKLGSRSMASGEIALEGAQAYLIGEIGRGFHQMADMINMSRLSNGVRAAGLMRRA
LNEALHVAAHREAFGRKLIEMPLMQRQLLKMLLPAEAARAMFMQIALLLPQADAGDEQAARCVRILTPLIKFRACRDARR
VTGDAMEVRGGTGYIEEWSDARVVRDAHLGSIWEGTSNIVALDVARAAQREQALDALRAFLGDRLGAAPLPDASRAALRR
ILARACDALMRVAAEGDDARVRQAASALYYASAAVLMACEGVRLAPDFRRLALAHLVVRHKLLPIDPLAPASRDDESAAY
DALLRGTPIALDTALDLLPEVER
>Mature_583_residues
MNDTARTPDAGASNIPDSRGINFFTVDPDLGALLKLHLGDAHYAELEPRLRALGARVSGELDEWASRADKHPPVLEHRNR
RGEAVQRIDKDPAYVALERVAYAELGLASLSHGSESVPPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRRFGDPALVA
RYLPMLASRDFDTLYQGAMFMTEQAAGSDVARIATRATRETDALGETVWRLTGDKWFCSNADADLAMVLARPDGAPDGIK
GLALFLLPKTLPDGTRNRYRIVRLKDKLGSRSMASGEIALEGAQAYLIGEIGRGFHQMADMINMSRLSNGVRAAGLMRRA
LNEALHVAAHREAFGRKLIEMPLMQRQLLKMLLPAEAARAMFMQIALLLPQADAGDEQAARCVRILTPLIKFRACRDARR
VTGDAMEVRGGTGYIEEWSDARVVRDAHLGSIWEGTSNIVALDVARAAQREQALDALRAFLGDRLGAAPLPDASRAALRR
ILARACDALMRVAAEGDDARVRQAASALYYASAAVLMACEGVRLAPDFRRLALAHLVVRHKLLPIDPLAPASRDDESAAY
DALLRGTPIALDTALDLLPEVER

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=322, Percent_Identity=27.639751552795, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI226958412, Length=310, Percent_Identity=28.3870967741935, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI226958414, Length=310, Percent_Identity=28.3870967741935, Blast_Score=107, Evalue=4e-23,
Organism=Homo sapiens, GI21361497, Length=324, Percent_Identity=27.7777777777778, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4557233, Length=273, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI4557235, Length=328, Percent_Identity=27.1341463414634, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI76496475, Length=328, Percent_Identity=27.1341463414634, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI4557231, Length=276, Percent_Identity=30.0724637681159, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI187960098, Length=276, Percent_Identity=30.0724637681159, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI4501857, Length=275, Percent_Identity=27.6363636363636, Blast_Score=80, Evalue=7e-15,
Organism=Homo sapiens, GI7656849, Length=323, Percent_Identity=24.4582043343653, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87082384, Length=397, Percent_Identity=34.2569269521411, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI87081958, Length=273, Percent_Identity=27.4725274725275, Blast_Score=83, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI86563383, Length=495, Percent_Identity=31.1111111111111, Blast_Score=218, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI86563381, Length=495, Percent_Identity=31.1111111111111, Blast_Score=218, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI17538396, Length=304, Percent_Identity=29.2763157894737, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17508101, Length=290, Percent_Identity=26.8965517241379, Blast_Score=106, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=317, Percent_Identity=26.813880126183, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=316, Percent_Identity=29.746835443038, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551932, Length=322, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17570075, Length=284, Percent_Identity=27.4647887323944, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17533517, Length=352, Percent_Identity=25, Blast_Score=88, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17534899, Length=292, Percent_Identity=26.027397260274, Blast_Score=81, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17569725, Length=300, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=203, Percent_Identity=26.1083743842365, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71985184, Length=300, Percent_Identity=25.6666666666667, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=219, Percent_Identity=24.6575342465753, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982178, Length=196, Percent_Identity=27.0408163265306, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17534353, Length=302, Percent_Identity=24.1721854304636, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666513, Length=321, Percent_Identity=25.2336448598131, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21355753, Length=308, Percent_Identity=28.2467532467532, Blast_Score=106, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24660351, Length=276, Percent_Identity=29.3478260869565, Blast_Score=91, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21356377, Length=281, Percent_Identity=27.4021352313167, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI281363737, Length=301, Percent_Identity=25.5813953488372, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24646207, Length=275, Percent_Identity=25.8181818181818, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 63629; Mature: 63629

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTARTPDAGASNIPDSRGINFFTVDPDLGALLKLHLGDAHYAELEPRLRALGARVSGE
CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
LDEWASRADKHPPVLEHRNRRGEAVQRIDKDPAYVALERVAYAELGLASLSHGSESVPPL
HHHHHHHCCCCCCHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VKYALTFLFVQAEFGLCCPVSMTDSLTRTLRRFGDPALVARYLPMLASRDFDTLYQGAMF
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
MTEQAAGSDVARIATRATRETDALGETVWRLTGDKWFCSNADADLAMVLARPDGAPDGIK
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCCHHH
GLALFLLPKTLPDGTRNRYRIVRLKDKLGSRSMASGEIALEGAQAYLIGEIGRGFHQMAD
HHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHHH
MINMSRLSNGVRAAGLMRRALNEALHVAAHREAFGRKLIEMPLMQRQLLKMLLPAEAARA
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MFMQIALLLPQADAGDEQAARCVRILTPLIKFRACRDARRVTGDAMEVRGGTGYIEEWSD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCHHCCCC
ARVVRDAHLGSIWEGTSNIVALDVARAAQREQALDALRAFLGDRLGAAPLPDASRAALRR
CHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
ILARACDALMRVAAEGDDARVRQAASALYYASAAVLMACEGVRLAPDFRRLALAHLVVRH
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KLLPIDPLAPASRDDESAAYDALLRGTPIALDTALDLLPEVER
HCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNDTARTPDAGASNIPDSRGINFFTVDPDLGALLKLHLGDAHYAELEPRLRALGARVSGE
CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
LDEWASRADKHPPVLEHRNRRGEAVQRIDKDPAYVALERVAYAELGLASLSHGSESVPPL
HHHHHHHCCCCCCHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VKYALTFLFVQAEFGLCCPVSMTDSLTRTLRRFGDPALVARYLPMLASRDFDTLYQGAMF
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
MTEQAAGSDVARIATRATRETDALGETVWRLTGDKWFCSNADADLAMVLARPDGAPDGIK
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCCHHH
GLALFLLPKTLPDGTRNRYRIVRLKDKLGSRSMASGEIALEGAQAYLIGEIGRGFHQMAD
HHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHHH
MINMSRLSNGVRAAGLMRRALNEALHVAAHREAFGRKLIEMPLMQRQLLKMLLPAEAARA
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MFMQIALLLPQADAGDEQAARCVRILTPLIKFRACRDARRVTGDAMEVRGGTGYIEEWSD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCHHCCCC
ARVVRDAHLGSIWEGTSNIVALDVARAAQREQALDALRAFLGDRLGAAPLPDASRAALRR
CHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
ILARACDALMRVAAEGDDARVRQAASALYYASAAVLMACEGVRLAPDFRRLALAHLVVRH
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KLLPIDPLAPASRDDESAAYDALLRGTPIALDTALDLLPEVER
HCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]