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The map label for this gene is yfdE [H]

Identifier: 78066937

GI number: 78066937

Start: 2551151

End: 2552347

Strand: Reverse

Name: yfdE [H]

Synonym: Bcep18194_A5468

Alternate gene names: 78066937

Gene position: 2552347-2551151 (Counterclockwise)

Preceding gene: 78066938

Following gene: 78066936

Centisome position: 69.09

GC content: 70.34

Gene sequence:

>1197_bases
ATGAGCCTGACGCGTGGTGCTCTGGACGGCCTGAAGGTCGTCGACCTGAGCCGTGTGCTCGGCGGCCCGTACTGCACGCA
GGCGCTCGCCGACCACGGTGCGACGGTGGTCAAGATCGAGCCGCCGGACGGCGACGAGACGCGCGGCTGGGGGCCGCCAT
TCCTCGGCGATACGGCCTGGTATTTCATGGGCGTGAACCGCAACAAGGAAGGGCTCGCGCTCGACCTGTCTCGCGCCGAA
GGGCGCGCAATCCTGTGGCGTCTGCTCGAAGAGGCCGACGTGCTCGTCGAGAACTTCAAGCCCGGCACGCTCGCGCGCTG
GGGGATGGATTACGCGCGCGACCTGCAGCCGCGTTTCCCGCGCCTGATCCACTGCGCGGTGACGGGCTTCGGCGAAGACG
GCCCGCTCGGCGGGCTGCCCGGCTACGACGCGGTGATCCAGGCGATGGCGGGGCTGATGAGCGTCAACGGCGAGCGCGAC
GGCGATGCGACGCGTATCGGTCTGCCGATCGTCGACATGGTCACGGGACTCAATGCGCTCGCGGGCATCCTGCTGGCGCT
CGCGGAGCGCGAGAAGAGCGGGCAGGGCCAGTCGATCGACATCGCACTGTACGACTGCGGCGTGTCGCTGCTGCATCCGC
ACCTGCCGAACTTCTTCGGTTCGGGGCGCGTGCCGGAGCGCAGCGGCAACGCGCATCCGAACATCGCGCCGTACGACAGC
TATCGCACGGCGACCGTGCCGATCTTCCTCGCGATCGGCAACGACCGGCAGTTCGCGCGGCTCGTCGCGCATCTCGGCGT
GCCGGCGCTCGCAAGCGATCCGCGTTTCGTCGACAACCGTAGCCGCTGCGCGCATCGGCCCGAGCTGAAGGCCGAACTGG
AAGCACGGCTCGCCGCGCATGCATGCGAGCCGCTCGCGCGCGACCTGATGGCGGCCGGCGTGCCGTGCGGGCCGGTGCGA
ACGGTCGCCGACGTCGCGCACGATCCGCATGCGCTGCACCGCAACCTGTTCGTCGAAATCGGTGCGTATCGCGGCACGGC
GTCGCCGGTGAAGCTGTCGCGCACGCCGGCCACCTATCGTTCGCCGCCGCCTGCACTGGGCGGCGACACGCGCGCGGTGC
TCGATCGCCTCGGCGTCGATCCCGCGCTCCAGCAGCAACTGCTCGACGCCGGCGTGCTGAGGGAAGCCCCCGGCTAG

Upstream 100 bases:

>100_bases
CGGCATCGCGCGACGACGAATCGGCCGCGTACGACGCACTGCTGCGCGGCACGCCGATCGCACTCGATACCGCGCTCGAT
CTGCTGCCGGAGGTCGAACG

Downstream 100 bases:

>100_bases
GCGCCGCCGACCGGCACGACGCCGCCGGCCGGCGGCGCGATGCCGGCCACCCGGGAAAGGCGCGCGACAGTCGCGCCCCC
GACACGCAAACATGGAGACA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MSLTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPDGDETRGWGPPFLGDTAWYFMGVNRNKEGLALDLSRAE
GRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPRFPRLIHCAVTGFGEDGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGQGQSIDIALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
YRTATVPIFLAIGNDRQFARLVAHLGVPALASDPRFVDNRSRCAHRPELKAELEARLAAHACEPLARDLMAAGVPCGPVR
TVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRSPPPALGGDTRAVLDRLGVDPALQQQLLDAGVLREAPG

Sequences:

>Translated_398_residues
MSLTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPDGDETRGWGPPFLGDTAWYFMGVNRNKEGLALDLSRAE
GRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPRFPRLIHCAVTGFGEDGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGQGQSIDIALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
YRTATVPIFLAIGNDRQFARLVAHLGVPALASDPRFVDNRSRCAHRPELKAELEARLAAHACEPLARDLMAAGVPCGPVR
TVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRSPPPALGGDTRAVLDRLGVDPALQQQLLDAGVLREAPG
>Mature_397_residues
SLTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPDGDETRGWGPPFLGDTAWYFMGVNRNKEGLALDLSRAEG
RAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPRFPRLIHCAVTGFGEDGPLGGLPGYDAVIQAMAGLMSVNGERDG
DATRIGLPIVDMVTGLNALAGILLALAEREKSGQGQSIDIALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDSY
RTATVPIFLAIGNDRQFARLVAHLGVPALASDPRFVDNRSRCAHRPELKAELEARLAAHACEPLARDLMAAGVPCGPVRT
VADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRSPPPALGGDTRAVLDRLGVDPALQQQLLDAGVLREAPG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=35.4430379746835, Blast_Score=253, Evalue=2e-67,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=33.2541567695962, Blast_Score=238, Evalue=6e-63,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=29.9287410926366, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=31.3924050632911, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=30.0254452926209, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=30.0254452926209, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=35.3741496598639, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=35.3741496598639, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=38.1766381766382, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1788717, Length=399, Percent_Identity=30.3258145363409, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=26.302729528536, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI32564160, Length=353, Percent_Identity=24.6458923512748, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=254, Percent_Identity=28.3464566929134, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=39.8950131233596, Blast_Score=260, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24585488, Length=394, Percent_Identity=29.6954314720812, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42565; Mature: 42434

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPDGDETRGWGPPFLGDTAW
CCCCCHHCCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEE
YFMGVNRNKEGLALDLSRAEGRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPRFP
EEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHCCCCHH
RLIHCAVTGFGEDGPLGGLPGYDAVIQAMAGLMSVNGERDGDATRIGLPIVDMVTGLNAL
HEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
AGILLALAEREKSGQGQSIDIALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
HHHHHHHHHHHCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRTATVPIFLAIGNDRQFARLVAHLGVPALASDPRFVDNRSRCAHRPELKAELEARLAAH
CCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
ACEPLARDLMAAGVPCGPVRTVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYR
HHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHEEEEEECCCCCCCCEEECCCCCCCC
SPPPALGGDTRAVLDRLGVDPALQQQLLDAGVLREAPG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLTRGALDGLKVVDLSRVLGGPYCTQALADHGATVVKIEPPDGDETRGWGPPFLGDTAW
CCCCHHCCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEE
YFMGVNRNKEGLALDLSRAEGRAILWRLLEEADVLVENFKPGTLARWGMDYARDLQPRFP
EEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHCCCCHH
RLIHCAVTGFGEDGPLGGLPGYDAVIQAMAGLMSVNGERDGDATRIGLPIVDMVTGLNAL
HEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
AGILLALAEREKSGQGQSIDIALYDCGVSLLHPHLPNFFGSGRVPERSGNAHPNIAPYDS
HHHHHHHHHHHCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRTATVPIFLAIGNDRQFARLVAHLGVPALASDPRFVDNRSRCAHRPELKAELEARLAAH
CCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
ACEPLARDLMAAGVPCGPVRTVADVAHDPHALHRNLFVEIGAYRGTASPVKLSRTPATYR
HHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHEEEEEECCCCCCCCEEECCCCCCCC
SPPPALGGDTRAVLDRLGVDPALQQQLLDAGVLREAPG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]