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The map label for this gene is yhjC [H]

Identifier: 78066424

GI number: 78066424

Start: 1978446

End: 1979363

Strand: Reverse

Name: yhjC [H]

Synonym: Bcep18194_A4955

Alternate gene names: 78066424

Gene position: 1979363-1978446 (Counterclockwise)

Preceding gene: 78066425

Following gene: 78066423

Centisome position: 53.58

GC content: 59.26

Gene sequence:

>918_bases
ATGGATACACTTCTTTCGATGCGCATATTCACACGCATCGTCGAAACAGGCAGCTTAACGCGCGCGTCGGACACAACTGG
TCTCACGACGCCGCGTGTATCCGCGATGCTGCGCACACTCGAACAACATCTCGGCTGCCGATTGTTGAACCGCACAACCC
GCCGGCTATCGCTGACAGAGGACGGGCAGTCGTACTACGAACGCTGCATCGCCGTACTGCGTGAGATCGATGACATGGAG
GCGTCGGTTTCCCGTGCACGCAGCGCTCCACGTGGTCGCTTGAAGGTAAACCTGCCCCCGGCAATGGCCAAGCAGATACT
CGTACCCGCACTGCCCGCCTTTCTCGCCTCGAACCCGGACATCACGATCGAACTCGGTGCGACGGATCGCCATATCGACG
TCGTAGGGGAAGGCGTCGACTGCGTCGTCCGGATTGGCGCACTCGACGACTCCGGATTGATTGCCAAACGGATCGGCGAC
CTCACGACCTGTACCTGTGCAGCACCGTCGTACATCGAGCGATACGGAGTGCCCGAGACCGTCGGCGACCTTACGCGACA
TATCGCAGTCAACCATGTATCACCTGATACGGGTCGCCCCCGGATCTGGGATTTTGTCATTGATGGGGAAGCGCGTATCG
CACAGATGTGCGCCTCCGTCGCGGTCAACGATGCCGATACGTATATCGCATGCGGCGTGGCCGGCATCGGATTGATCAAA
ACCTCGCTGTACCTGGTCACGCCGTATCTGGCGTCCGGCGAATTGCGCGAAGTGCTGACAGACGTCAACTCACCGCCGCG
GCCAATCTCCGTGGTGTATCCGCCCAATCGCCACATACCAGCCAAGCTGAAGATCTTCGTTGACTGGCTCTCCGATCTAT
ACGCACAGGTTCCGACGTTGCAAGGCAAGCGAAACTGA

Upstream 100 bases:

>100_bases
CCTGCGCGAAATGCCGTTCGCTGGAGAACGGCTCAGAAGGCGTATCGACGCGTAGGCGCGCACGGGTGCTGCCGACTATC
AGGGTGGAGAATCGCGACTG

Downstream 100 bases:

>100_bases
GTGGACAGGTCTTGCGCATCACACCGAGCGCTCTGATCAACAAACACACGCCAGCGTGCGGCAGGTGCCTGCGCTGCACG
ATTCATATCGTTGGGAGCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDTLLSMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTEDGQSYYERCIAVLREIDDME
ASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPDITIELGATDRHIDVVGEGVDCVVRIGALDDSGLIAKRIGD
LTTCTCAAPSYIERYGVPETVGDLTRHIAVNHVSPDTGRPRIWDFVIDGEARIAQMCASVAVNDADTYIACGVAGIGLIK
TSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWLSDLYAQVPTLQGKRN

Sequences:

>Translated_305_residues
MDTLLSMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTEDGQSYYERCIAVLREIDDME
ASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPDITIELGATDRHIDVVGEGVDCVVRIGALDDSGLIAKRIGD
LTTCTCAAPSYIERYGVPETVGDLTRHIAVNHVSPDTGRPRIWDFVIDGEARIAQMCASVAVNDADTYIACGVAGIGLIK
TSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWLSDLYAQVPTLQGKRN
>Mature_305_residues
MDTLLSMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTEDGQSYYERCIAVLREIDDME
ASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPDITIELGATDRHIDVVGEGVDCVVRIGALDDSGLIAKRIGD
LTTCTCAAPSYIERYGVPETVGDLTRHIAVNHVSPDTGRPRIWDFVIDGEARIAQMCASVAVNDADTYIACGVAGIGLIK
TSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWLSDLYAQVPTLQGKRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=34.9315068493151, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=31.9587628865979, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=30.2631578947368, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=31.8021201413428, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=32.3943661971831, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=25.9649122807018, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=27.2108843537415, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=29.8429319371728, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=286, Percent_Identity=24.8251748251748, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=23.3898305084746, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=120, Percent_Identity=32.5, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=28.448275862069, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=23.0240549828179, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33310; Mature: 33310

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLSMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTE
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
DGQSYYERCIAVLREIDDMEASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCC
ITIELGATDRHIDVVGEGVDCVVRIGALDDSGLIAKRIGDLTTCTCAAPSYIERYGVPET
EEEEECCCCCEEEEECCCCEEEEEEECCCCCCHHHHHHCCCEEEHHCCHHHHHHCCCCHH
VGDLTRHIAVNHVSPDTGRPRIWDFVIDGEARIAQMCASVAVNDADTYIACGVAGIGLIK
HHHHHHHHEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
TSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWLSDLYAQVPTL
HHHHHEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
QGKRN
CCCCC
>Mature Secondary Structure
MDTLLSMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTE
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
DGQSYYERCIAVLREIDDMEASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCC
ITIELGATDRHIDVVGEGVDCVVRIGALDDSGLIAKRIGDLTTCTCAAPSYIERYGVPET
EEEEECCCCCEEEEECCCCEEEEEEECCCCCCHHHHHHCCCEEEHHCCHHHHHHCCCCHH
VGDLTRHIAVNHVSPDTGRPRIWDFVIDGEARIAQMCASVAVNDADTYIACGVAGIGLIK
HHHHHHHHEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
TSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWLSDLYAQVPTL
HHHHHEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
QGKRN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]