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The map label for this gene is ydeR [H]

Identifier: 78066423

GI number: 78066423

Start: 1976841

End: 1978058

Strand: Reverse

Name: ydeR [H]

Synonym: Bcep18194_A4954

Alternate gene names: 78066423

Gene position: 1978058-1976841 (Counterclockwise)

Preceding gene: 78066424

Following gene: 78066422

Centisome position: 53.55

GC content: 61.17

Gene sequence:

>1218_bases
ATGTCAGAAACTTCACCGTCGCTCGAGGCTCGCGATCGTGCTACGAAGCTCACGCAAGGGCTCATTGCGTTATTCGCGTT
CAGTTGCGGTGCGATTGTCGCGAACCTGTACTACGCGCAGCCCATCACCGAACTGATCGCACCCAGCCTGCACATGTCCA
GCGACACGGCGAGTTTCATTGTGTCGCTGACGCAGATCGGCTACGCATTCGGCCTGTTCTTCATCGTGCCGCTTGGCGAC
CTGCTGGAGAACCGGAAGCTGATGATCACAACAGCCCTTGTTTCGATTGCGAGCCTTTCAGCGGCGGCGATCGCCCACAC
GCCAGGCCTGTTTCTCATGATCTCGCTACTGGTCGGCTTTAGTTCGGTGGCGGTACAGATACTGATTCCGCTCGCCGCGC
ACTTGGCGCCGGATCATTCGCGTGGCCGTGTCGTCGGTACCATCATGAGCGGGTTGCTGCTCGGCATTCTGCTCGCCCGC
CCGCTTTCGAGCGTAGTGGCCGATGCGTTTGGCTGGCGCTTTGTATTCGCAGCGGCTGCCGTGCTGATGACGCTCGTCAC
GGCTTTGCTTGCGCTGACGATTCCATCGCGCCGGCCTGATCATCGTTCGACATACTTCGAGCTGATCGGCTCGCTGCTGC
ATCTGGTTCGCACAATGCCCGTGCTGCGTCATCGTGCGCTCTACCAGGGTCTGATGTTCGCATCGTTCAGCCTGTTTTGG
ACCGCGGTCCCGGTCGAGCTCACGCGTCACTATGGGCTGTCGCAATCGGCAATTGGGCTGTTCGCGCTCGTCGGTGCGAT
TGGAGCGACTTCGGCACCGGTTGCGGGTCGCCTAGCGGATGCAGGCCATACCGTGCGCGCAACGCTGATTGCGCTGATCG
CCGGCACGCTGTCGTACGCAGTGGGCCTATTCCACGGTACCGGCCTGTATGGTCTCGTCGTCACGGGTATCGTGCTCGAT
TTCGCGGTCCAGATGAACATGGTGCTAGGTCAACGTGAAATTTATGCACTGCATGCGGCAAGCCGTAATCGCCTGAACGC
GCTTTACATGACCAGCATCTTCGTTGGCGGCGCAGCCGGTTCGGCACTCGCAAGCCCACTATACGAACACGGCGGCTGGC
CGCTCGTCGCGGCGGTGGCCGCGGCCTTCCCGATTGCCGCACTTGCGCACTACCTTGCGATCGGCCGCCCGCATGCACAG
CGTCACGCACAGACCTGA

Upstream 100 bases:

>100_bases
GCAACACGGTGGACGGCACAACGTTCACCACGATGCTACGCAAATGCAACACCAGCCGGGCCCGATAAACGCCTGGCTCC
CCTCGCTCAAGGAGTCGATC

Downstream 100 bases:

>100_bases
ACCCGGGCCGGCACCGGTTTAACGCGAACTCGGCTCCCGCTTGTCGCGCCCGCGAGATCCATGCCGGCACGCTTCCCATA
AACCTTCCGCAGGGTTGACG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSETSPSLEARDRATKLTQGLIALFAFSCGAIVANLYYAQPITELIAPSLHMSSDTASFIVSLTQIGYAFGLFFIVPLGD
LLENRKLMITTALVSIASLSAAAIAHTPGLFLMISLLVGFSSVAVQILIPLAAHLAPDHSRGRVVGTIMSGLLLGILLAR
PLSSVVADAFGWRFVFAAAAVLMTLVTALLALTIPSRRPDHRSTYFELIGSLLHLVRTMPVLRHRALYQGLMFASFSLFW
TAVPVELTRHYGLSQSAIGLFALVGAIGATSAPVAGRLADAGHTVRATLIALIAGTLSYAVGLFHGTGLYGLVVTGIVLD
FAVQMNMVLGQREIYALHAASRNRLNALYMTSIFVGGAAGSALASPLYEHGGWPLVAAVAAAFPIAALAHYLAIGRPHAQ
RHAQT

Sequences:

>Translated_405_residues
MSETSPSLEARDRATKLTQGLIALFAFSCGAIVANLYYAQPITELIAPSLHMSSDTASFIVSLTQIGYAFGLFFIVPLGD
LLENRKLMITTALVSIASLSAAAIAHTPGLFLMISLLVGFSSVAVQILIPLAAHLAPDHSRGRVVGTIMSGLLLGILLAR
PLSSVVADAFGWRFVFAAAAVLMTLVTALLALTIPSRRPDHRSTYFELIGSLLHLVRTMPVLRHRALYQGLMFASFSLFW
TAVPVELTRHYGLSQSAIGLFALVGAIGATSAPVAGRLADAGHTVRATLIALIAGTLSYAVGLFHGTGLYGLVVTGIVLD
FAVQMNMVLGQREIYALHAASRNRLNALYMTSIFVGGAAGSALASPLYEHGGWPLVAAVAAAFPIAALAHYLAIGRPHAQ
RHAQT
>Mature_404_residues
SETSPSLEARDRATKLTQGLIALFAFSCGAIVANLYYAQPITELIAPSLHMSSDTASFIVSLTQIGYAFGLFFIVPLGDL
LENRKLMITTALVSIASLSAAAIAHTPGLFLMISLLVGFSSVAVQILIPLAAHLAPDHSRGRVVGTIMSGLLLGILLARP
LSSVVADAFGWRFVFAAAAVLMTLVTALLALTIPSRRPDHRSTYFELIGSLLHLVRTMPVLRHRALYQGLMFASFSLFWT
AVPVELTRHYGLSQSAIGLFALVGAIGATSAPVAGRLADAGHTVRATLIALIAGTLSYAVGLFHGTGLYGLVVTGIVLDF
AVQMNMVLGQREIYALHAASRNRLNALYMTSIFVGGAAGSALASPLYEHGGWPLVAAVAAAFPIAALAHYLAIGRPHAQR
HAQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=401, Percent_Identity=26.1845386533666, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42753; Mature: 42622

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETSPSLEARDRATKLTQGLIALFAFSCGAIVANLYYAQPITELIAPSLHMSSDTASFI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VSLTQIGYAFGLFFIVPLGDLLENRKLMITTALVSIASLSAAAIAHTPGLFLMISLLVGF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SSVAVQILIPLAAHLAPDHSRGRVVGTIMSGLLLGILLARPLSSVVADAFGWRFVFAAAA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLMTLVTALLALTIPSRRPDHRSTYFELIGSLLHLVRTMPVLRHRALYQGLMFASFSLFW
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAVPVELTRHYGLSQSAIGLFALVGAIGATSAPVAGRLADAGHTVRATLIALIAGTLSYA
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH
VGLFHGTGLYGLVVTGIVLDFAVQMNMVLGQREIYALHAASRNRLNALYMTSIFVGGAAG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEHHCCCCHHHHHHHHHHHCCCCH
SALASPLYEHGGWPLVAAVAAAFPIAALAHYLAIGRPHAQRHAQT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure 
SETSPSLEARDRATKLTQGLIALFAFSCGAIVANLYYAQPITELIAPSLHMSSDTASFI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VSLTQIGYAFGLFFIVPLGDLLENRKLMITTALVSIASLSAAAIAHTPGLFLMISLLVGF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SSVAVQILIPLAAHLAPDHSRGRVVGTIMSGLLLGILLARPLSSVVADAFGWRFVFAAAA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLMTLVTALLALTIPSRRPDHRSTYFELIGSLLHLVRTMPVLRHRALYQGLMFASFSLFW
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAVPVELTRHYGLSQSAIGLFALVGAIGATSAPVAGRLADAGHTVRATLIALIAGTLSYA
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH
VGLFHGTGLYGLVVTGIVLDFAVQMNMVLGQREIYALHAASRNRLNALYMTSIFVGGAAG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEHHCCCCHHHHHHHHHHHCCCCH
SALASPLYEHGGWPLVAAVAAAFPIAALAHYLAIGRPHAQRHAQT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]