Click here to switch to the map view.

The map label for this gene is pal [H]

Identifier: 78065362

GI number: 78065362

Start: 805141

End: 805653

Strand: Reverse

Name: pal [H]

Synonym: Bcep18194_A3888

Alternate gene names: 78065362

Gene position: 805653-805141 (Counterclockwise)

Preceding gene: 78065363

Following gene: 78065361

Centisome position: 21.81

GC content: 62.38

Gene sequence:

>513_bases
ATGATGTCGAATAAAGCTCGTCTGGCCCTGGCCGTGATGATGATCAGCGCGCTCGCAGCGTGCAAGTCGGGCGTGAAGCT
CGACGACAAGGCAAACAACGCGGGTGCAGTCAGCACGCAACCGAGCGCCGACAACGTCGCGCAAGTGAACGTCGATCCGC
TGAACGACCCGAACAGCCCGCTCGCGAAGCGCAGCATCTACTTCGACTTCGACAGCTATTCGGTGAAGGACGAGTACCAG
CCGCTGATGCAGCAGCACGCTCAGTACCTGAAGAGCCACCCGCAGCGCCACGTGCTGATCCAGGGCAACACCGACGAACG
CGGCACGAGCGAGTACAACCTCGCGCTGGGCCAGAAGCGTGCGGAAGCCGTCCGTCGTGCGATGGCACTGCTCGGCGTGA
ACGATTCGCAAATGGAAGCCGTGAGCCTCGGCAAGGAAAAGCCGCAGGCAGCGGGTCACGACGAAGCATCGTGGGCGCAG
AACCGTCGCGCCGACCTCGTCTACCAACAGTAA

Upstream 100 bases:

>100_bases
CCGACGGCAGCGCGCCGCCGCAAATCCTGTCCGTCCAGGGCGGCTCCGTACGTGAGCCGTCGTGGGGGCCCTTCATGCAA
TGACCACAAGGAGAGTAAAC

Downstream 100 bases:

>100_bases
GTAACGGAAGAATCGCCGTATGACGCACCGTGTATCCCTGCTGCGCGTTGCCGCAGCATTCTGCGTCGCCGGCGCGGCGT
GGTCGGCCGCGCCGGCGCAC

Product: OmpA/MotB family outer membrane protein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MMSNKARLALAVMMISALAACKSGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSPLAKRSIYFDFDSYSVKDEYQ
PLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQAAGHDEASWAQ
NRRADLVYQQ

Sequences:

>Translated_170_residues
MMSNKARLALAVMMISALAACKSGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSPLAKRSIYFDFDSYSVKDEYQ
PLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQAAGHDEASWAQ
NRRADLVYQQ
>Mature_170_residues
MMSNKARLALAVMMISALAACKSGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSPLAKRSIYFDFDSYSVKDEYQ
PLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQAAGHDEASWAQ
NRRADLVYQQ

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=103, Percent_Identity=46.6019417475728, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI48994946, Length=142, Percent_Identity=32.3943661971831, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18660; Mature: 18660

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSNKARLALAVMMISALAACKSGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSP
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
LAKRSIYFDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKR
CHHCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
AEAVRRAMALLGVNDSQMEAVSLGKEKPQAAGHDEASWAQNRRADLVYQQ
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMSNKARLALAVMMISALAACKSGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSP
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
LAKRSIYFDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKR
CHHCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
AEAVRRAMALLGVNDSQMEAVSLGKEKPQAAGHDEASWAQNRRADLVYQQ
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]