| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is arnT2 [H]
Identifier: 78049479
GI number: 78049479
Start: 4502473
End: 4504194
Strand: Reverse
Name: arnT2 [H]
Synonym: XCV3923
Alternate gene names: 78049479
Gene position: 4504194-4502473 (Counterclockwise)
Preceding gene: 78049480
Following gene: 78049478
Centisome position: 86.98
GC content: 67.6
Gene sequence:
>1722_bases ATGTTCAAGAATCGCGCTTCCACCGATGTCTGGTTGCTGGCCATGACCGCCGTGCTGGTAATTGGAGCCGGCCTGGGGTT GCGTGACCCATGGCCGGCGGACGAGCCGCGCTTTGCGCTGGTGGCCAAGCAGATGGTGTTGAGCGGCGACTGGTTGTTCC CGCATCGCGGCAACGAGCTGTATTCGGACAAGCCACCGATGCTGATGTGGCTGCAGGCGCTGTTCTACACGCTGCTGGGC AATTGGCGGGTGGCGTTCCTGCTGCCGTCGTTGCTGGCCGCGTTGGGCACACTGGCCTGCGTCTACGATCTGGGCCGGCG GCTGTGGACCCGGCGCGTGGGCGTGTATGCGGCCTGGATGCTGCTGTTTACGCTGCACTTCACCTTTCAGGCCAAGAAGG CGCAGATCGACCCGCTGGTGGTGTTCTGGATCACCCTGGCCAATTACGGCTTGCTGCGGCATCTGCTGATGGGTCCTGCC TGGCGCTGGTGGACGCTGGGCTGGTTCGCCGCCGGGTTGGGCGTGATCACCAAGGGCGTTGGCATCATCGCGCTGCTGCT GCTGATCCCGGCCGGGATTGCAGCGGCGCGTGGCTGGCCGGGCGTGCGCGTGCACGTGCGCGACCGGCGCTTCTGGCTGG GGCCGCTGTTCTTCTTCGTGGCAATCGCGCTGTGGTTCGTGCCGATGATGGTGACCGCGCTGACCGCCGGCCAGCCCGAA TACCGCGTGTATCTCAACGACATCCTGCTGCGCCAGACCGCCAAGCGCTACGCCAACTCCTGGGATCATGCGCAGCCGGT CTGGTACCACCTGCAAAGCATGGCCACGATGTGGCTGCCGACCATCCTGCTGCTGCCGTGGGCGATTCCGGCGTGGCGGC GCCGGCTGAAGCGACGCGATCCGCGCTATCTGCTGCTGCTGGCCTGGTGGCTGCTGGTGCTGGTGTTCTTCACCATTCCC AGCGGCAAGCGCGATGTGTACATCCTGCCGGCGCTGCCGATGTTCTGCCTGGCGCTGGCGCCGCTGGTGCCGGGCCTGCT GCGCCGGGCTGGCGTGCAGCGGCTGCTGTTCGGGTTCGGCCTGCTGTTGGCAGTGGCGTTCAGCACGGGCGGCGTGGCGA TGCTGATCGGCCACCCGGGCTTCGAGCAGAAGATCATGGACAGCCGCGGGGTCGGCAGCGAAGCCACCGACCCGCTGGGC TGGCTGCTGCTGGCGGTGGGTAGCTGGGGCATCGCCAGCCTGCTGCTGGTGCGCGTGCGCCGCTCCGCGTTCGCGGTGGT TTCGCTGCTTGGCGCGTGGTGGGTGGCGTTCGGGCTGGTGTGTTACCCGATCTTCAACGATTCCAGTTCGGCCGGTGCGG TGATGCGCGAGGCCGGGCGCCGCATCGGCCCGGATGCGCAACTCGGGCTGGTGGCGTGGAAGGAGCAGAACCTGCTGATG GCCGACCGGCCTGCGCAGACCTTCGGCTTCAAGGTGCCGTGGGAAGCCCAATTGCAGCGCGGCGTGGCCTGGCAGGCAGA GCAACCCGGCCAGCGCTGGCTGATGGCACAGGAGACCGCATTGCTGGCCTGCGTGGATCGCAGCCGCAGCCAGTTGGTGG GCGTGGCCAATCGCCGGCGCTGGTGGTTGGTGCCGTCCGATGCCGTGCGTGGCCCCTGCGTGGCCAGCTCCAGCGAGCGT GCGGTGGAAGCAAAGGAGCAGGGCAACCTGGATACCGAATGA
Upstream 100 bases:
>100_bases CGAGGCGCACTGCGACGGATTTTTCTACGCGCTTTTGCTAAAAGCCTCCTGATCGCGCGAAGTCCAGCGCTCCACCCTCT GCGTCCGACTGCCGCCCGAG
Downstream 100 bases:
>100_bases GCCGGCCGACTCCACCGGCACACGCGCGTACCAGGTGCCATTGGCACCGCGTCAATGCAGCGGCCGGTCGCCGTCTAGCA GGGATTCATGCGTCGCATCG
Product: putative dolichyl-phosphate mannosyltransferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase 2; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase 2 [H]
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALFYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGVYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPA WRWWTLGWFAAGLGVITKGVGIIALLLLIPAGIAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYANSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLLLAWWLLVLVFFTIP SGKRDVYILPALPMFCLALAPLVPGLLRRAGVQRLLFGFGLLLAVAFSTGGVAMLIGHPGFEQKIMDSRGVGSEATDPLG WLLLAVGSWGIASLLLVRVRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWEAQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPSDAVRGPCVASSSER AVEAKEQGNLDTE
Sequences:
>Translated_573_residues MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALFYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGVYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPA WRWWTLGWFAAGLGVITKGVGIIALLLLIPAGIAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYANSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLLLAWWLLVLVFFTIP SGKRDVYILPALPMFCLALAPLVPGLLRRAGVQRLLFGFGLLLAVAFSTGGVAMLIGHPGFEQKIMDSRGVGSEATDPLG WLLLAVGSWGIASLLLVRVRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWEAQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPSDAVRGPCVASSSER AVEAKEQGNLDTE >Mature_573_residues MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALFYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGVYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPA WRWWTLGWFAAGLGVITKGVGIIALLLLIPAGIAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYANSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLLLAWWLLVLVFFTIP SGKRDVYILPALPMFCLALAPLVPGLLRRAGVQRLLFGFGLLLAVAFSTGGVAMLIGHPGFEQKIMDSRGVGSEATDPLG WLLLAVGSWGIASLLLVRVRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWEAQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPSDAVRGPCVASSSER AVEAKEQGNLDTE
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=318, Percent_Identity=24.5283018867925, Blast_Score=76, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 64360; Mature: 64360
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNEL CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC YSDKPPMLMWLQALFYTLLGNWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGVYAAWM CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPAWRWWTLGWFAAGLGVITKGV HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GIIALLLLIPAGIAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE HHHHHHHHHHCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YRVYLNDILLRQTAKRYANSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC PRYLLLLAWWLLVLVFFTIPSGKRDVYILPALPMFCLALAPLVPGLLRRAGVQRLLFGFG CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLAVAFSTGGVAMLIGHPGFEQKIMDSRGVGSEATDPLGWLLLAVGSWGIASLLLVRVR HHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH RSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCEEE ADRPAQTFGFKVPWEAQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRR ECCCHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE WWLVPSDAVRGPCVASSSERAVEAKEQGNLDTE EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNEL CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC YSDKPPMLMWLQALFYTLLGNWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGVYAAWM CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPAWRWWTLGWFAAGLGVITKGV HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GIIALLLLIPAGIAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE HHHHHHHHHHCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YRVYLNDILLRQTAKRYANSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC PRYLLLLAWWLLVLVFFTIPSGKRDVYILPALPMFCLALAPLVPGLLRRAGVQRLLFGFG CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLAVAFSTGGVAMLIGHPGFEQKIMDSRGVGSEATDPLGWLLLAVGSWGIASLLLVRVR HHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH RSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCEEE ADRPAQTFGFKVPWEAQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRR ECCCHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE WWLVPSDAVRGPCVASSSERAVEAKEQGNLDTE EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA