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The map label for this gene is ygiD [H]

Identifier: 78049383

GI number: 78049383

Start: 4411948

End: 4412796

Strand: Reverse

Name: ygiD [H]

Synonym: XCV3827

Alternate gene names: 78049383

Gene position: 4412796-4411948 (Counterclockwise)

Preceding gene: 78049391

Following gene: 78049382

Centisome position: 85.21

GC content: 69.85

Gene sequence:

>849_bases
ATGCTGTTTTCATCGATCAAGGAGCTGTCCATGACCCGCTTGCCCTCCCTGTACATCTCGCACGGCTCGCCGATGACTGC
GCTGCAGCCGGGGCAGGTCGGCGAGCGCCTGGCCGACCTGCGGCACGCGTTGCCGCGGCCGCGTGCCATCGTGGTGGCGA
GCGCGCACTGGCTGGGCCGTCGCCCGCTGGTCAGCGGTGCGCTGCGGCCGCCGACCATTCACGACTTTGGCGGCTTCCCG
GCGCCGTTGTATGCGCTGGACTATCCGGCGCCCGGCGAGCCGGCATTGGCGCAGCAGATCGTGCGCCGGCTGGAGCAGGC
CGGCCTGCATCCGCAACTGGACCCGCAGCGCGGCTTCGATCACGGCGTCTGGGTGCCGCTGCGCCTGCTGTATCCGGACG
CCGACATCCCGGTGGTGTCGCTATCGATCCAGCCCGAGCTGGGACCGGCGCACCAGTTCGCGGTGGGGTGTGCGCTGGCG
CCATTGCGCGATGACGGCGTGCTGGTGGTCGGCTCAGGCAGCATCACCCATAACCTGCACGACTTGCGCCACGGCTACAG
CGCCGAGCGGCAAGCGCCGTACGTGCGGCCCTTCATCGAATGGACCGAACGCAAGCTGCTGGACAACGACATCCCCGCGC
TGCTGGACTACCGCCGCCAGGCGCCGCATGCCGCACGCGCGCATCCCAGCGACGAGCACTGGCTGCCGCTGTACGTGGCG
ATGGGGGCGGCCGGCGATGACCGGCTTGGTGCGCAGCGCATCGACGCCGGCATCGATGCGGGTTTGATGGCCATGGATCT
GTATCGCTTCGATGGCCCTGCAGCGGCGGCGGACCCGATCGCGGCATAG

Upstream 100 bases:

>100_bases
GAAACCCGGGCGGCGACCGGGGACCTGGCGTCATGGGCGGAGTCGGTGATCGCCCGGGCCTTGCCCGACCAGGCGCATTC
GCCATGAGGCCGTCGCGCCG

Downstream 100 bases:

>100_bases
CGCCGGGGTGCGGACGTGGGCGCATCGGCATGTTTGCGCCAAGTGCTGCAATGCCGATCGGGATGGCGCAATCGCACGGT
CGGCAGGGGCGGGGACGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MLFSSIKELSMTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRPPTIHDFGGFP
APLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGCALA
PLRDDGVLVVGSGSITHNLHDLRHGYSAERQAPYVRPFIEWTERKLLDNDIPALLDYRRQAPHAARAHPSDEHWLPLYVA
MGAAGDDRLGAQRIDAGIDAGLMAMDLYRFDGPAAAADPIAA

Sequences:

>Translated_282_residues
MLFSSIKELSMTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRPPTIHDFGGFP
APLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGCALA
PLRDDGVLVVGSGSITHNLHDLRHGYSAERQAPYVRPFIEWTERKLLDNDIPALLDYRRQAPHAARAHPSDEHWLPLYVA
MGAAGDDRLGAQRIDAGIDAGLMAMDLYRFDGPAAAADPIAA
>Mature_282_residues
MLFSSIKELSMTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRPPTIHDFGGFP
APLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGCALA
PLRDDGVLVVGSGSITHNLHDLRHGYSAERQAPYVRPFIEWTERKLLDNDIPALLDYRRQAPHAARAHPSDEHWLPLYVA
MGAAGDDRLGAQRIDAGIDAGLMAMDLYRFDGPAAAADPIAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=41.2213740458015, Blast_Score=170, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30715; Mature: 30715

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSSIKELSMTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGR
CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCC
RPLVSGALRPPTIHDFGGFPAPLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFD
CCHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
HGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGCALAPLRDDGVLVVGSGSITHNLH
CCCEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHEECCCCCCCEEEEECCCHHHHHH
DLRHGYSAERQAPYVRPFIEWTERKLLDNDIPALLDYRRQAPHAARAHPSDEHWLPLYVA
HHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
MGAAGDDRLGAQRIDAGIDAGLMAMDLYRFDGPAAAADPIAA
ECCCCCCHHCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLFSSIKELSMTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGR
CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCC
RPLVSGALRPPTIHDFGGFPAPLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFD
CCHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
HGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGCALAPLRDDGVLVVGSGSITHNLH
CCCEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHEECCCCCCCEEEEECCCHHHHHH
DLRHGYSAERQAPYVRPFIEWTERKLLDNDIPALLDYRRQAPHAARAHPSDEHWLPLYVA
HHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
MGAAGDDRLGAQRIDAGIDAGLMAMDLYRFDGPAAAADPIAA
ECCCCCCHHCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]