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The map label for this gene is ygcF [C]

Identifier: 78048825

GI number: 78048825

Start: 3736424

End: 3737107

Strand: Reverse

Name: ygcF [C]

Synonym: XCV3269

Alternate gene names: 78048825

Gene position: 3737107-3736424 (Counterclockwise)

Preceding gene: 78048826

Following gene: 78048823

Centisome position: 72.17

GC content: 64.47

Gene sequence:

>684_bases
ATGAATGCCGCCGCCGTCCCCAGCGAGATCGTCCAGTCGCCATTGCCGCGGTTGAAGATCACCGAAATCTTTTTGTCCCT
GCAAGGCGAGGCCGAAGCGGCTGGCTGGCCCACGGTATTCGTCCGCCTGACCGGCTGCCCGTTGCGCTGCCTGTACTGCG
ACACCGCGTACGCGTTCCATGGCGGGCAGTGGCATGACATTGACGCAATCGTCGCCGAAGTCGCCAGTCATGGTGTGCGC
CATGTCTGCGTGACCGGCGGCGAGCCGTTGGCGCAGAAGCGTTGCCTGGTTCTGCTGGAGAAGCTCTGCGACGCCGGTTA
CGACGTCTCGTTGGAGACCTCCGGTGCGCTGGACGTGTCTGCCGTTGATCCGCGCGTCTCGCGCGTGGTCGACATCAAGA
CGCCCGCATCCGGCGAGGAGGCACGCAATCGCTGGGAAAACCTGCCGCTGCTGACCGCGCGCGACCAGATCAAGTTCGTG
ATCTGCAGCCGCGTCGACTACGAATGGTCGCGCGAGATCGTCGCCGCGCATACACTGGATCGCCGCTGCACGGTGTGGTT
TTCGCCCAGCAAAAGCGAGGTGAGCCCACGGCAACTGGCTGACTGGATCGTGGCAGACCGCTTGCCGGTGCGCTTCCAGA
TGCAGCTGCACAAGCTGCTGTGGAACGACGAGCCTGGGCGGTGA

Upstream 100 bases:

>100_bases
CGGCACGCGTTGCGCAGGAGCGCCTGCAGTCCATCCGTCTCGGCCAGCAACTGCGCTGAGCCTCGCGTTCGTGCCTGCCG
GCACGGCGCATACTTTGCCC

Downstream 100 bases:

>100_bases
GGCAGGCGCGTAGCGCTGTGCATCAGGCGACTGCCTTGCGCTGGCAAAAATTACGGACGGTGTTTTGATTTGCTCAGGCA
GCCGGTGATCCCACAAAGTG

Product: putative radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNAAAVPSEIVQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCLYCDTAYAFHGGQWHDIDAIVAEVASHGVR
HVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFV
ICSRVDYEWSREIVAAHTLDRRCTVWFSPSKSEVSPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR

Sequences:

>Translated_227_residues
MNAAAVPSEIVQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCLYCDTAYAFHGGQWHDIDAIVAEVASHGVR
HVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFV
ICSRVDYEWSREIVAAHTLDRRCTVWFSPSKSEVSPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR
>Mature_227_residues
MNAAAVPSEIVQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCLYCDTAYAFHGGQWHDIDAIVAEVASHGVR
HVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFV
ICSRVDYEWSREIVAAHTLDRRCTVWFSPSKSEVSPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=226, Percent_Identity=28.3185840707965, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25348; Mature: 25348

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAAAVPSEIVQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCLYCDTAYAFH
CCCCCCCHHHHHCCCCCCEEEHEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCHHEEC
GGQWHDIDAIVAEVASHGVRHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALDVS
CCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
AVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRVDYEWSREIVAAHTLD
ECCCHHHEEEEECCCCCCHHHHHHHHCCCEEEECCCEEEEEEECCCCHHHHHHHHHHCCC
RRCTVWFSPSKSEVSPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR
CEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNAAAVPSEIVQSPLPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRCLYCDTAYAFH
CCCCCCCHHHHHCCCCCCEEEHEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCHHEEC
GGQWHDIDAIVAEVASHGVRHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALDVS
CCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
AVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRVDYEWSREIVAAHTLD
ECCCHHHEEEEECCCCCCHHHHHHHHCCCEEEECCCEEEEEEECCCCHHHHHHHHHHCCC
RRCTVWFSPSKSEVSPRQLADWIVADRLPVRFQMQLHKLLWNDEPGR
CEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]