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The map label for this gene is ybgF [C]

Identifier: 78048826

GI number: 78048826

Start: 3737149

End: 3737967

Strand: Reverse

Name: ybgF [C]

Synonym: XCV3270

Alternate gene names: 78048826

Gene position: 3737967-3737149 (Counterclockwise)

Preceding gene: 78048827

Following gene: 78048825

Centisome position: 72.18

GC content: 63.74

Gene sequence:

>819_bases
ATGCGCTTTCGAGTGACATCCCTGTTCGTCGCGGCGGCCCTCGTGGTCGCCGCGCCGGCATACGCCCAGCGAGCCAGTCT
CGCTGATCGTGTGGCCGTGCTCGAGCAGCAGCAGGCCAATAGTCAGGCCAACAACGATCTCCTCAATCAGCTGCAGCAGG
CGCGTTCGGACCTGCAGGCATTGCGGTCGACCGTCGAACAGCTGCAGCACGACAATGAGCAACTCAAGCAGCAGTCCAAG
GACCAATATCTGGACCTGGATGGACGCTTGAACCGGTTGGAAGGCGCAGGTGGCGCAACACCGCCATTGCCCCCAGCGAC
CGGCAGCGTGACCCCGGCCCCGGCACCTGCTGCGCGGCCCGCAGCGGCGGCAACTTCCGAGAAGCCGCCCACCGTCCATG
GCGACCCAGGCACCCTGGCCGTCAGCAACGACGAACGTACGGCCTACAACGTGGCCTTCGATGCATTGAAGAACGGCAAG
TACGACGATGCGTCGCAGCTGTTCCTGAGCTTTCTGGAGCTCTATCCCAACGGCGTCTATACCCCCAATGCCTTGTATTG
GCTGGGCGAGAGCTATTACGCCACCCGTAATTTCCAGCTTGCCGAGGCGCAGTTCCGCGATCTCGTCAGCCGCTATCCCA
CGCATGACAAGGCCGCCGGCGGCTTGTTGAAGCTTGGCCTGTCGCAGTACGGCGAAGGCAAGAACAACGAGGCCCAGCAG
ACCTTGCAGCAGGTTGCTTCGCAGTACCCCGGCTCCGACGCGGCACGCGTTGCGCAGGAGCGCCTGCAGTCCATCCGTCT
CGGCCAGCAACTGCGCTGA

Upstream 100 bases:

>100_bases
CAGCTACGGCGAAGAGCGTCCGGTCTGCACCGAGTCGAACGAGTCCTGCTGGTCGCAGAACCGCCGCGTCGAAATCGTGT
ACACGGCTCAGTAAGAAGCG

Downstream 100 bases:

>100_bases
GCCTCGCGTTCGTGCCTGCCGGCACGGCGCATACTTTGCCCATGAATGCCGCCGCCGTCCCCAGCGAGATCGTCCAGTCG
CCATTGCCGCGGTTGAAGAT

Product: putative secreted protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQALRSTVEQLQHDNEQLKQQSK
DQYLDLDGRLNRLEGAGGATPPLPPATGSVTPAPAPAARPAAAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGK
YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQQ
TLQQVASQYPGSDAARVAQERLQSIRLGQQLR

Sequences:

>Translated_272_residues
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQALRSTVEQLQHDNEQLKQQSK
DQYLDLDGRLNRLEGAGGATPPLPPATGSVTPAPAPAARPAAAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGK
YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQQ
TLQQVASQYPGSDAARVAQERLQSIRLGQQLR
>Mature_272_residues
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQALRSTVEQLQHDNEQLKQQSK
DQYLDLDGRLNRLEGAGGATPPLPPATGSVTPAPAPAARPAAAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGK
YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQQ
TLQQVASQYPGSDAARVAQERLQSIRLGQQLR

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=244, Percent_Identity=31.5573770491803, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29557; Mature: 29557

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LRSTVEQLQHDNEQLKQQSKDQYLDLDGRLNRLEGAGGATPPLPPATGSVTPAPAPAARP
HHHHHHHHHCCHHHHHHHHHHCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY
CHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQQ
CCCHHEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
TLQQVASQYPGSDAARVAQERLQSIRLGQQLR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFRVTSLFVAAALVVAAPAYAQRASLADRVAVLEQQQANSQANNDLLNQLQQARSDLQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LRSTVEQLQHDNEQLKQQSKDQYLDLDGRLNRLEGAGGATPPLPPATGSVTPAPAPAARP
HHHHHHHHHCCHHHHHHHHHHCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAAATSEKPPTVHGDPGTLAVSNDERTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY
CHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNNEAQQ
CCCHHEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
TLQQVASQYPGSDAARVAQERLQSIRLGQQLR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]