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The map label for this gene is 78047899

Identifier: 78047899

GI number: 78047899

Start: 2674161

End: 2675879

Strand: Reverse

Name: 78047899

Synonym: XCV2343

Alternate gene names: NA

Gene position: 2675879-2674161 (Counterclockwise)

Preceding gene: 78047902

Following gene: 78047898

Centisome position: 51.67

GC content: 64.34

Gene sequence:

>1719_bases
ATGCTCAATACTCGTGTGCACCAAAGCGAGATGAGCATGGCGACCGATACCGCACCGATTACCGAGCACGGCGTGGCCAC
CCTGCCAGAACAGGCATGGGAGCGTGCGCGTCGTCGCGCGGAGATCATTGGGCCGTTGGCGCAGTCGGAGACGGTTGGGC
ATGAAGCGGCCGACGCGGCAGCCCAGGCATTGGGGCTGTCCCGGCGGCAGGTCTACGTCCTGATCCGCCGTGCCCGGCTA
GGATCGGGGCTGGTCACTGACTTGGCTCTTGGGCAGTCGAGCGGTGGCAAAGGTAAAGGCCGCTTGCCGGAGTCGGTCGA
ACGAATCATCCGCGAGTTACTGCAAAAGCGCTTCCTGACCAAGCAGAAGCGTAGCTTGGCGGCGTTCCACCGCGAAGTTG
TGCGGGCGTGCAAGCTGCAAAAGCTGCGGGTGCCGGCGCGCAACACGGTGGCTCTGCGGATCGCCGGCCTCGATCCGCGC
GAGGTCACTCACCGCCGGGAAGGACAAGATGCCGCCCGCGACCTGCAAGGTGTTGGTGGTGTTCCGCCACCCGTCTCCGC
GCCGCTGGAGCAGGTGCAGATCGACCACACAGTCATCGACCTGATCGTGGTGGACGAGCGCGACCGGCAACCGATTGGCC
GTCCGTATCTGACCATCGCCATCGACGTGTTTACCCGCTGCGTGCTCGGCATGGTCGTCACGCTGGAAGCGCCGTCATCT
GTTTCGGTCGGCCTGTGCCTTGTGCATGTCGCCTGCGACAAGCGTCCCTGGCTGGAGGGTCTGAACATAGAAATGGAGTG
GCCGATGAGCGGCAAGCCCAGGCTGCTCTACCTGGACAACGCGGCCGAGTTCAAGAGCGAAGCGCTACGCCGAGGCTGCG
AGCAGCATGGCATCCGGCTTGACTATCGCCCGCTCGGGCAGCCGCACTACGGCGGCATCGTGGAACGGATCATCGGCACG
GCGATGCAGATGATCCACGACGAATTGCCAGGGACGACCTTCTCCAACCCTGACCAGCGCGGCGACTACGATTCCGAAAA
CAAGGCCGCCCTGACGCTGCGTGAGCTGGAGCGCTGGCTCACATTGGCGGTCGGCACCTACCACGGCTCCGTGCACAACG
GCCTGCTCCAGCCGCCGGCAGCGCGCTGGGCCGAAGCTATCGCGCGGACCGGCGTGCCAACCGTCATCACTCGCACCACG
GCTTTTCTGGTCGATTTTCTGCCCATCATCCGCCGCACGCTGACCCGCACCGGCTTCGTCATCGACCACATCCATTACTA
CGCCGATGCGCTCAAGCCGTGGATAGCTCGGCGCGACCGCTTGCCTGCGTTCCTGATCCGGCGCGACCCGCGCGACATCA
GCCGCATTTGGGTGCTGGAGCCGGAGGGGCAGCACTATCTGGAAATTCCATACCGCACCTTGTCGCACCCGGCTGTCACC
CTCTGGGAACAACGACAGGCGCTGGCGAAATTGCGGCAGCAAGGGCGCGAACAGGTGGATGAGTCGGCGCTGTTTCGCAT
GATCGGCCAGATGCGCGAAATCGTGTCCACCGCGCAGAAAGCTACGCGCAAGGCGCGGCGCGACGCGGATCGACGCCAGC
ATCTCAAGGCAACGGCAGTTCTTTTCAAAACCACGCCACCACCGGACGCGGACATGGCTGACCCGCAGGCAGACAACCAG
CCACCTGCCAAACCGTTCGACCAGATTGAGGAGTGGTAG

Upstream 100 bases:

>100_bases
TTTTCAGAAGACGACCGCACCATCTGACTGGATGTAACGCCTGGTGTGCATACGGCTCCTGACAGCCCAATATCAGGAGT
CGTCTGCACCAATCTCGACT

Downstream 100 bases:

>100_bases
CCGTGGAAGAATATCCCATCATCGACTTGTCCCACCTGATGCCGGTGGCCCAGGGCTTGGCCCGTCTTCCGGCGGACGAA
CGCATCCATCGCCTTCGCGC

Product: putative transposase

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAAAQALGLSRRQVYVLIRRARL
GSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLTKQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPR
EVTHRREGQDAARDLQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTIAIDVFTRCVLGMVVTLEAPSS
VSVGLCLVHVACDKRPWLEGLNIEMEWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGT
AMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAIARTGVPTVITRTT
AFLVDFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVSTAQKATRKARRDADRRQHLKATAVLFKTTPPPDADMADPQADNQ
PPAKPFDQIEEW

Sequences:

>Translated_572_residues
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAAAQALGLSRRQVYVLIRRARL
GSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLTKQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPR
EVTHRREGQDAARDLQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTIAIDVFTRCVLGMVVTLEAPSS
VSVGLCLVHVACDKRPWLEGLNIEMEWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGT
AMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAIARTGVPTVITRTT
AFLVDFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVSTAQKATRKARRDADRRQHLKATAVLFKTTPPPDADMADPQADNQ
PPAKPFDQIEEW
>Mature_572_residues
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAAAQALGLSRRQVYVLIRRARL
GSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLTKQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPR
EVTHRREGQDAARDLQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTIAIDVFTRCVLGMVVTLEAPSS
VSVGLCLVHVACDKRPWLEGLNIEMEWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGT
AMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAIARTGVPTVITRTT
AFLVDFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVSTAQKATRKARRDADRRQHLKATAVLFKTTPPPDADMADPQADNQ
PPAKPFDQIEEW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 64327; Mature: 64327

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAA
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHH
AQALGLSRRQVYVLIRRARLGSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLT
HHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPREVTHRREGQDAARDLQGVGG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC
VPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTIAIDVFTRCVLGMVVTLEAPSS
CCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCC
VSVGLCLVHVACDKRPWLEGLNIEMEWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRL
CCHHHHHEEHHHCCCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
DYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWL
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
TLAVGTYHGSVHNGLLQPPAARWAEAIARTGVPTVITRTTAFLVDFLPIIRRTLTRTGFV
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
IDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCEEECCHHHHCCCHHH
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVSTAQKATRKARRDADRRQHLKATAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LFKTTPPPDADMADPQADNQPPAKPFDQIEEW
EEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAA
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHH
AQALGLSRRQVYVLIRRARLGSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLT
HHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPREVTHRREGQDAARDLQGVGG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC
VPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTIAIDVFTRCVLGMVVTLEAPSS
CCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCC
VSVGLCLVHVACDKRPWLEGLNIEMEWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRL
CCHHHHHEEHHHCCCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
DYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWL
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
TLAVGTYHGSVHNGLLQPPAARWAEAIARTGVPTVITRTTAFLVDFLPIIRRTLTRTGFV
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
IDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCEEECCHHHHCCCHHH
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVSTAQKATRKARRDADRRQHLKATAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LFKTTPPPDADMADPQADNQPPAKPFDQIEEW
EEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]