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The map label for this gene is ykgD [C]

Identifier: 78047902

GI number: 78047902

Start: 2677528

End: 2678370

Strand: Reverse

Name: ykgD [C]

Synonym: XCV2346

Alternate gene names: 78047902

Gene position: 2678370-2677528 (Counterclockwise)

Preceding gene: 78047905

Following gene: 78047899

Centisome position: 51.72

GC content: 68.8

Gene sequence:

>843_bases
ATGGCGGATCGACTGGCCGGCTTGCTCCGGCACTACTCGCTTTCGGCGCGCGTTTTTCACAGCGGCGCCTTCTGTGGGCA
GCATCATTACGCGGCGCCGCATGGCTATATCCATCTGGTGCGGCGCGGCCCGATTACGGCGCGTTCGCCCGTGCATGAAG
ATCTGCTGGTTACCGAGCCGAGCCTGCTGTTTTATCCGCGCGTGGCGTCGCATCGTTTTGTCGCCGCCCCCGGCGATACC
GCTGAGCAGTTGTGTGCGGAGGTCGACCTGGGCGCTTCGACGGGCAATCCGTTGGCCATGGCCTTGCCGTCGATGCTGCT
GATTCCGTTGGCGGACTTGCCCGGCCTCGGGCCGACGCTAGAGTTGCTGTTTGCCGAAGCCGAGCGCGACCAGTGCGGTC
GGCAGGCCGCCATCGACCGCTTGTGCGAGTTGCTACTGATCCAGTTGCTGCGTTATCTGATGGATGGGCGGCTTGGCGCC
ACCGGACTGCTGGCGGGCCTGGCCGACCCGAAACTCGCGCGCGCCATAACCGCCATGCACGATGCGCCGCAGACCGCGTG
GTCGCTCGAGGCGCTGGCGGCGAAGGCGGGCATGTCACGCGCGCGCTTCGCCGCCGCGTTCAAGGACGCGGTGGGCGTCA
CGCCGGGCGACTATCTGGCCGACTGGCGGATGAACGTCAGTTGCACCCTGCTCAAGCAGGGGCGGCCGGTGGCGGTGGTG
GCCGACCGCGTCGGCTACGGCAGCCCGAACGCTCTGGCGCGCGCCTTCCGCGTGCGCATGGGCTGCGCCCCGCGCGACTG
GCTGGCGCAGCAGCGCGGTGACGCGGCGCTCAGCGGTTCGTGA

Upstream 100 bases:

>100_bases
GTGAGGTGCAAGAGCACGTGGGCATGATCGCCCTTTGTTTGGTACGATATGGCACGTAAAGTATCAAATACGTAACCTAT
CGTCTTATATGGAGAGTGGA

Downstream 100 bases:

>100_bases
GTTTGAGTTCGATTCGCCGGTTCTTGGCGTAGGCGGCGCCGGTGTTGCGCTCGTCGAGCGGGTGAAATTCGCATCACGCC
GGAACAACTGGCGGAACTCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MADRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHGYIHLVRRGPITARSPVHEDLLVTEPSLLFYPRVASHRFVAAPGDT
AEQLCAEVDLGASTGNPLAMALPSMLLIPLADLPGLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGA
TGLLAGLADPKLARAITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQGRPVAVV
ADRVGYGSPNALARAFRVRMGCAPRDWLAQQRGDAALSGS

Sequences:

>Translated_280_residues
MADRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHGYIHLVRRGPITARSPVHEDLLVTEPSLLFYPRVASHRFVAAPGDT
AEQLCAEVDLGASTGNPLAMALPSMLLIPLADLPGLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGA
TGLLAGLADPKLARAITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQGRPVAVV
ADRVGYGSPNALARAFRVRMGCAPRDWLAQQRGDAALSGS
>Mature_279_residues
ADRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHGYIHLVRRGPITARSPVHEDLLVTEPSLLFYPRVASHRFVAAPGDTA
EQLCAEVDLGASTGNPLAMALPSMLLIPLADLPGLGPTLELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGAT
GLLAGLADPKLARAITAMHDAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQGRPVAVVA
DRVGYGSPNALARAFRVRMGCAPRDWLAQQRGDAALSGS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=239, Percent_Identity=25.1046025104602, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29956; Mature: 29825

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHGYIHLVRRGPITARSPVHEDLLVTEP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECC
SLLFYPRVASHRFVAAPGDTAEQLCAEVDLGASTGNPLAMALPSMLLIPLADLPGLGPTL
CEEEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
ELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGATGLLAGLADPKLARAITAMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
DAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQGRPVAVV
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCEEEE
ADRVGYGSPNALARAFRVRMGCAPRDWLAQQRGDAALSGS
ECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ADRLAGLLRHYSLSARVFHSGAFCGQHHYAAPHGYIHLVRRGPITARSPVHEDLLVTEP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECC
SLLFYPRVASHRFVAAPGDTAEQLCAEVDLGASTGNPLAMALPSMLLIPLADLPGLGPTL
CEEEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
ELLFAEAERDQCGRQAAIDRLCELLLIQLLRYLMDGRLGATGLLAGLADPKLARAITAMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
DAPQTAWSLEALAAKAGMSRARFAAAFKDAVGVTPGDYLADWRMNVSCTLLKQGRPVAVV
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCEEEE
ADRVGYGSPNALARAFRVRMGCAPRDWLAQQRGDAALSGS
ECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]