BacMap

Definition	Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession	NC_007508
Length	5,178,466

Click here to switch to the map view.

The map label for this gene is ucpA [C]

Identifier: 78047566

GI number: 78047566

Start: 2292165

End: 2292872

Strand: Reverse

Name: ucpA [C]

Synonym: XCV2010

Alternate gene names: 78047566

Gene position: 2292872-2292165 (Counterclockwise)

Preceding gene: 78047567

Following gene: 78047565

Centisome position: 44.28

GC content: 65.82

Gene sequence:

>708_bases
GTGACCGGCGCGTCGTCGGGCATTGGCGCTGCAGTCGCCACGTTGTGCGCGCGTCTGGGCGCGAGGGTGGTGCTCACCGG
CCGCGATATTGCGCGACTGGATGCGGTTGCGGTCGCGTTGCAGGGCAATGGGCATGCGGTGGTGGCCGGCGATCTGACCG
AAGAAGACACCCGTACACGTCTGATCAACGCTGCAGAACGGTATCACGGGCTGGTTTCCTGCGCAGGCATCGCGGCGCTG
GTGCCGTTCCGCATGGCCGCAGAAAAGCATCTGCAACAAATGCTGTCGGTGAACTATCTGGCACCGATCGCGCTGACGCA
GCGGTTGCTGGTCAAGCGCCGCCTGAGCGAAGGCGCATCGCTGGTCTATATCTCGGCATTGTCCGCACGCGCGGCGCCTC
AGGCCGCCGCCGGCTACGCAGCATCCAAGGCAGCGCTGGAAGCTGCGGTCCGCACGCTGGCGCTCGAACAGGCCAAACAC
GGCATCCGCGCCAACTGCATCGCGCCAGGCTACGTGGACACGCCCATGCTGAAGAAATTGGGCGCCGCAGCAGACCTGGA
CGACAAGATCGGACTGACGCCGCTGGGGCGCATCGACCCGGACGACATCGCCAAAGGCGCGGTGTATCTGCTGTCGGGGG
CCAGCCGCTGGATTACCCGCAGCGCCTTGACCATCGATGGCGGGATTTCCCTGCCCATCCGCCTATGA

Upstream 100 bases:

>100_bases
TGGATATCGAGGGCGCGGTGTTTCCTGATTTGATCGAGTCATGACGGCCACACCTGCAGCAACCACTGATGCGTTCGGGC
TGCAAAACAAGACCGTTCTA

Downstream 100 bases:

>100_bases
GCATTGACACTACCATGGCAGCAGAAGATCCTGTTTCCGCGCTGCTGCGCGACCTATATGGCCTGCACGGCAAGACCGTA
TTGGTGACCGGCGCATCCAA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTGASSGIGAAVATLCARLGARVVLTGRDIARLDAVAVALQGNGHAVVAGDLTEEDTRTRLINAAERYHGLVSCAGIAAL
VPFRMAAEKHLQQMLSVNYLAPIALTQRLLVKRRLSEGASLVYISALSARAAPQAAAGYAASKAALEAAVRTLALEQAKH
GIRANCIAPGYVDTPMLKKLGAAADLDDKIGLTPLGRIDPDDIAKGAVYLLSGASRWITRSALTIDGGISLPIRL

Sequences:

>Translated_235_residues
MTGASSGIGAAVATLCARLGARVVLTGRDIARLDAVAVALQGNGHAVVAGDLTEEDTRTRLINAAERYHGLVSCAGIAAL
VPFRMAAEKHLQQMLSVNYLAPIALTQRLLVKRRLSEGASLVYISALSARAAPQAAAGYAASKAALEAAVRTLALEQAKH
GIRANCIAPGYVDTPMLKKLGAAADLDDKIGLTPLGRIDPDDIAKGAVYLLSGASRWITRSALTIDGGISLPIRL
>Mature_234_residues
TGASSGIGAAVATLCARLGARVVLTGRDIARLDAVAVALQGNGHAVVAGDLTEEDTRTRLINAAERYHGLVSCAGIAALV
PFRMAAEKHLQQMLSVNYLAPIALTQRLLVKRRLSEGASLVYISALSARAAPQAAAGYAASKAALEAAVRTLALEQAKHG
IRANCIAPGYVDTPMLKKLGAAADLDDKIGLTPLGRIDPDDIAKGAVYLLSGASRWITRSALTIDGGISLPIRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=29.9180327868852, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=30.1204819277108, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=32.9113924050633, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI5031737, Length=185, Percent_Identity=35.1351351351351, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=35.1351351351351, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI59889578, Length=223, Percent_Identity=30.9417040358744, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI19923817, Length=246, Percent_Identity=26.4227642276423, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI7705925, Length=238, Percent_Identity=28.9915966386555, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI126723191, Length=174, Percent_Identity=30.4597701149425, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI10190704, Length=243, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=25.6, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI109715829, Length=226, Percent_Identity=27.4336283185841, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=30.5220883534137, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=29.7959183673469, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787526, Length=236, Percent_Identity=30.5084745762712, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787905, Length=235, Percent_Identity=29.7872340425532, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=27.4590163934426, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=238, Percent_Identity=27.3109243697479, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=31.25, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=30.7392996108949, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=238, Percent_Identity=30.672268907563, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=31.5384615384615, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=30.6513409961686, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=31.0077519379845, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=239, Percent_Identity=28.0334728033473, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=243, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=255, Percent_Identity=28.6274509803922, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=32.8185328185328, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=28.3582089552239, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=30.4878048780488, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.5384615384615, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=29.3436293436293, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=256, Percent_Identity=29.296875, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=29.4573643410853, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=27.8688524590164, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=28.6259541984733, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=28.4046692607004, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=25.5144032921811, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=29.3436293436293, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=29.4573643410853, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=186, Percent_Identity=30.1075268817204, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=141, Percent_Identity=30.4964539007092, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI23397609, Length=239, Percent_Identity=32.2175732217573, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639444, Length=238, Percent_Identity=28.1512605042017, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643142, Length=237, Percent_Identity=29.957805907173, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21357041, Length=242, Percent_Identity=28.9256198347107, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=242, Percent_Identity=29.7520661157025, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI28571526, Length=242, Percent_Identity=29.7520661157025, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21358495, Length=216, Percent_Identity=28.2407407407407, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355319, Length=240, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356301, Length=255, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24343; Mature: 24211

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGASSGIGAAVATLCARLGARVVLTGRDIARLDAVAVALQGNGHAVVAGDLTEEDTRTR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHEEEEEECCCCEEEECCCCCHHHHHH
LINAAERYHGLVSCAGIAALVPFRMAAEKHLQQMLSVNYLAPIALTQRLLVKRRLSEGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LVYISALSARAAPQAAAGYAASKAALEAAVRTLALEQAKHGIRANCIAPGYVDTPMLKKL
EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHH
GAAADLDDKIGLTPLGRIDPDDIAKGAVYLLSGASRWITRSALTIDGGISLPIRL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHEEEECCCCCCCEEC
>Mature Secondary Structure 
TGASSGIGAAVATLCARLGARVVLTGRDIARLDAVAVALQGNGHAVVAGDLTEEDTRTR
CCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHEEEEEECCCCEEEECCCCCHHHHHH
LINAAERYHGLVSCAGIAALVPFRMAAEKHLQQMLSVNYLAPIALTQRLLVKRRLSEGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LVYISALSARAAPQAAAGYAASKAALEAAVRTLALEQAKHGIRANCIAPGYVDTPMLKKL
EEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHH
GAAADLDDKIGLTPLGRIDPDDIAKGAVYLLSGASRWITRSALTIDGGISLPIRL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHEEEECCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA