| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is idnO [H]
Identifier: 78047565
GI number: 78047565
Start: 2291389
End: 2292150
Strand: Reverse
Name: idnO [H]
Synonym: XCV2009
Alternate gene names: 78047565
Gene position: 2292150-2291389 (Counterclockwise)
Preceding gene: 78047566
Following gene: 78047564
Centisome position: 44.26
GC content: 62.6
Gene sequence:
>762_bases ATGGCAGCAGAAGATCCTGTTTCCGCGCTGCTGCGCGACCTATATGGCCTGCACGGCAAGACCGTATTGGTGACCGGCGC ATCCAAAGGCATCGGTGAAGCGGTCGCACGTGCATGCGCCGCCGCAGGGGCACGCCTGATCGTCACCGGGCGCGATGCGG AACGTCTGCAAACCACGCTGGCATCGCTGCACGGCGATGGCCATCGCCTGTTTGCTGGCGACCTGAGCGATGCGGCTGTC GTGCAACAACTCGCTGCCGATTGCGGGCCCGTCGACGGTGTGGTGCACAGCGCCGGCATTCGCGGGCTGTCGCCGATGAA GCTGGTAAGCGAAAAATTCCTGCGCGAGGTCATGGACATCAACTATCTGGCGCCGGTGATGCTGACCCGCCACCTGTTGG CGCGGCAATCACTACGCTCCGGTGGCTCGGTGATTTTCCTGTCGTCCATCGCCGCGTTGACCGGTACTGTCGGCGTTGGT CCGTATGCAGGCTCGAAGGCCGCATTGCTCGGTACTTTGCGACCGTTGGCGCTGGAGCTAGCACGTCGGAAAATCCGCGC CAACGCGTTGTGCCCCGGCCTGGTCGAGACCTCATTGATCAACGAGGACAAGGCCTGGTTCGAGGAAAGTCGCAAGCGCT ATCCGCTGGGCATCGGGCAGCCGGAAGACGTTGCATTGGCATGCCTGTACTTCCTCTCCGATGCCAGCAGCAAGGTCACC GGACAAGCCTTCAGCATGGACGGAGGCGTGGAATTCGCATGA
Upstream 100 bases:
>100_bases TGTATCTGCTGTCGGGGGCCAGCCGCTGGATTACCCGCAGCGCCTTGACCATCGATGGCGGGATTTCCCTGCCCATCCGC CTATGAGCATTGACACTACC
Downstream 100 bases:
>100_bases CATCCGCTACTCCCGCACCGCCTTATCACCTGCTGATCGTTGGCGCAGGTGGCTACGGAAGAGATATCGCATCGCTGGCA TACCATGAGGATCCGGCTTT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MAAEDPVSALLRDLYGLHGKTVLVTGASKGIGEAVARACAAAGARLIVTGRDAERLQTTLASLHGDGHRLFAGDLSDAAV VQQLAADCGPVDGVVHSAGIRGLSPMKLVSEKFLREVMDINYLAPVMLTRHLLARQSLRSGGSVIFLSSIAALTGTVGVG PYAGSKAALLGTLRPLALELARRKIRANALCPGLVETSLINEDKAWFEESRKRYPLGIGQPEDVALACLYFLSDASSKVT GQAFSMDGGVEFA
Sequences:
>Translated_253_residues MAAEDPVSALLRDLYGLHGKTVLVTGASKGIGEAVARACAAAGARLIVTGRDAERLQTTLASLHGDGHRLFAGDLSDAAV VQQLAADCGPVDGVVHSAGIRGLSPMKLVSEKFLREVMDINYLAPVMLTRHLLARQSLRSGGSVIFLSSIAALTGTVGVG PYAGSKAALLGTLRPLALELARRKIRANALCPGLVETSLINEDKAWFEESRKRYPLGIGQPEDVALACLYFLSDASSKVT GQAFSMDGGVEFA >Mature_252_residues AAEDPVSALLRDLYGLHGKTVLVTGASKGIGEAVARACAAAGARLIVTGRDAERLQTTLASLHGDGHRLFAGDLSDAAVV QQLAADCGPVDGVVHSAGIRGLSPMKLVSEKFLREVMDINYLAPVMLTRHLLARQSLRSGGSVIFLSSIAALTGTVGVGP YAGSKAALLGTLRPLALELARRKIRANALCPGLVETSLINEDKAWFEESRKRYPLGIGQPEDVALACLYFLSDASSKVTG QAFSMDGGVEFA
Specific function: Catalyzes a reversible reduction of 5-ketoglutanate to form D-gluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=34.0163934426229, Blast_Score=122, Evalue=4e-28, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=33.6, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=32.7731092436975, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=33.7254901960784, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=36.8421052631579, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=34.8066298342541, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=30.7053941908714, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=32.6612903225806, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI157739938, Length=210, Percent_Identity=27.6190476190476, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI66933014, Length=242, Percent_Identity=30.1652892561983, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=26.1904761904762, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=30.8056872037915, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI302344752, Length=160, Percent_Identity=34.375, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=31.0526315789474, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=31.0526315789474, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI302344755, Length=82, Percent_Identity=45.1219512195122, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=26.6375545851528, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI7657478, Length=204, Percent_Identity=30.8823529411765, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=28.6384976525822, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=31.7647058823529, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=30.327868852459, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=31.6872427983539, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=32.8, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=32.156862745098, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=27.8884462151394, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=25.5905511811024, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=32, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=29.9180327868852, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=26.1224489795918, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787820, Length=235, Percent_Identity=28.0851063829787, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=28.5140562248996, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=31.404958677686, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=30.46875, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=31.8367346938775, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=29.6747967479675, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=30.2681992337165, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=30.1158301158301, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=27.6, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=31.5384615384615, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=33.8289962825279, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994604, Length=244, Percent_Identity=30.7377049180328, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=29.7297297297297, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=29.277566539924, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=33.2075471698113, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=29.6577946768061, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.0827067669173, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=30.3501945525292, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=30.3846153846154, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567345, Length=207, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=29.9625468164794, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.3233082706767, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=28.735632183908, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=25.9541984732824, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17536651, Length=279, Percent_Identity=27.2401433691756, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193203115, Length=230, Percent_Identity=25.6521739130435, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=25.130890052356, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17536025, Length=266, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=27.6515151515151, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=197, Percent_Identity=30.4568527918782, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=25.7936507936508, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319635, Length=207, Percent_Identity=28.0193236714976, Blast_Score=63, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=252, Percent_Identity=25.3968253968254, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=33.7448559670782, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=34.4398340248963, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=31.3008130081301, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=32.3886639676113, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=30.6122448979592, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=30.2040816326531, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=26.4591439688716, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21356301, Length=231, Percent_Identity=26.8398268398268, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24640492, Length=210, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=25.8706467661692, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=29.5336787564767, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584744, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574402, Length=196, Percent_Identity=28.0612244897959, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364892, Length=219, Percent_Identity=26.9406392694064, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI116007236, Length=238, Percent_Identity=28.1512605042017, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI281364494, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 26472; Mature: 26341
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAEDPVSALLRDLYGLHGKTVLVTGASKGIGEAVARACAAAGARLIVTGRDAERLQTTL CCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHH ASLHGDGHRLFAGDLSDAAVVQQLAADCGPVDGVVHSAGIRGLSPMKLVSEKFLREVMDI HHHCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC NYLAPVMLTRHLLARQSLRSGGSVIFLSSIAALTGTVGVGPYAGSKAALLGTLRPLALEL HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH ARRKIRANALCPGLVETSLINEDKAWFEESRKRYPLGIGQPEDVALACLYFLSDASSKVT HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC GQAFSMDGGVEFA CCEEECCCCCCCC >Mature Secondary Structure AAEDPVSALLRDLYGLHGKTVLVTGASKGIGEAVARACAAAGARLIVTGRDAERLQTTL CCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHH ASLHGDGHRLFAGDLSDAAVVQQLAADCGPVDGVVHSAGIRGLSPMKLVSEKFLREVMDI HHHCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC NYLAPVMLTRHLLARQSLRSGGSVIFLSSIAALTGTVGVGPYAGSKAALLGTLRPLALEL HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH ARRKIRANALCPGLVETSLINEDKAWFEESRKRYPLGIGQPEDVALACLYFLSDASSKVT HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC GQAFSMDGGVEFA CCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]