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The map label for this gene is fliN [H]

Identifier: 78047546

GI number: 78047546

Start: 2270826

End: 2271164

Strand: Reverse

Name: fliN [H]

Synonym: XCV1990

Alternate gene names: 78047546

Gene position: 2271164-2270826 (Counterclockwise)

Preceding gene: 78047547

Following gene: 78047545

Centisome position: 43.86

GC content: 66.08

Gene sequence:

>339_bases
ATGATCAACTCCGACATCCTCGACGCCTCGCCTGCCACCTTCGACAGCCTGCAGGCCGAGCAGGACCAGAACGCCGCCGA
CCTCAACCTGGACGTGATCCTGGACGTACCGGTGACCCTGTCGCTGGAAGTGGGCCGCGCACGCATCCCGATCCGCAACC
TGCTGCAGCTCAACCAGGGCTCGGTGGTGGAACTGGAACGCGGCGCCGGCGAACCGCTCGATGTCTACGTCAACGGCACC
CTGATTGCGCACGGCGAGGTGGTCGTCATCAACGACCGCTTCGGCATCCGCCTGACCGACGTGGTCAGCCCCAGCGAACG
GATCCGGAGGCTGCGGTGA

Upstream 100 bases:

>100_bases
AATTCGGCGTTTCCAATGGCAACAACGCCGTCAAGATCACCGCCGTACGCCCGCCCGGCGTGCAAGCCCCACGCGCCGTT
CCCTCCCAGGACCCCAGCAA

Downstream 100 bases:

>100_bases
TCGGCCTGCTGGCCACTGCCGCGCCGGTCGCGGCCAAGGCGACCGGGGTCGGCGCGCAGGCACCGTCCTCGCCCAGCCTG
TTTGGCGCAGTCTTTGCATT

Product: flagellar motor switch/type III secretory pathway protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MINSDILDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGT
LIAHGEVVVINDRFGIRLTDVVSPSERIRRLR

Sequences:

>Translated_112_residues
MINSDILDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGT
LIAHGEVVVINDRFGIRLTDVVSPSERIRRLR
>Mature_112_residues
MINSDILDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGT
LIAHGEVVVINDRFGIRLTDVVSPSERIRRLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=83, Percent_Identity=57.8313253012048, Blast_Score=110, Evalue=2e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12272; Mature: 12272

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSDILDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCEECCHHHHHCCCCC
SVVELERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR
CEEEEECCCCCCEEEEECCEEEECCEEEEEECCCCEEEEECCCCHHHHHCCC
>Mature Secondary Structure
MINSDILDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCEECCHHHHHCCCCC
SVVELERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR
CEEEEECCCCCCEEEEECCEEEECCEEEEEECCCCEEEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]