| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is arnT2 [H]
Identifier: 78046808
GI number: 78046808
Start: 1411717
End: 1413444
Strand: Reverse
Name: arnT2 [H]
Synonym: XCV1252
Alternate gene names: 78046808
Gene position: 1413444-1411717 (Counterclockwise)
Preceding gene: 78046811
Following gene: 78046807
Centisome position: 27.29
GC content: 68.75
Gene sequence:
>1728_bases GTGTCGCCTGCCATCGCTGCCTCCTCATCCCGCCAGCGCGCACTGCTGGCCGCGCTGCTGACGATCGTCGTCAGCTTGCT GGCCGGGCTGGGCATGCGCCAACCCAATCCGCCGGACGAGCCGCGCTTCGTGCTGGCCGCGCGCACCATGGTCGAGACCG GCCAGTGGCTGCTGCCGCACCGTGGCAGCGAGTTGTATGCAGAAAAACCGCCGGCCTTCATGTGGCTGCAGGCGGCCACC TACGAACTGGTACCGCACTGGCCGGTGGCCTTCCTGCTGCCGTCGCTGCTGGCCGCGCTGGCCACGTTGTGGCTGACCTG GGATATCGCGCGCCGGCTCTGGACGCGGCGCGTGGCGGCCCACGCGGTGCTGGCCTTGTTCACGGTGCTGCAGTTCGGCC TGATGGCCAAGCGTGCGCAGATCGATATGGTGCTGGTGGCGCTGACCACACTGTCGTTGTGGGGACTGCTGCGGCACCTG CTGCGCGGGCCGGACTGGCGCGCCTGGACGCTGGGCCTGTTTGCTGCCGGCGTCGGCACGGTGACCAAGGGCGTCGGTTT TCTGCCGCTGCTGGTTTTGCTGCCGTGGATGGCGCTGCGGCGTACGCATTGGCGCGTATTGCCGGCGCGCGCGCTGGCAG GACGCAGCTGGGCACTGGTGCTGCCGGCGTTCGTGGCCGGTACGGCGGTGTGGCTGGGGCCGCTGGGCATCGCGCTGTGG CACAGCGACGACACGCAGCTGCATGCCTATGCGCACGAGCTGTTGTTCAAGCAGACCGGCACGCGCTACGCGCACGCCTG GCATCACGTCAAACCGTTCTGGTACTACCTGCAGGTGATCGCCACCTTGTGGCTGCCCGGATGCCTGTTGTTGCCGTGGC TGCTGCCGGCCTGGTGGCGGCGACTGCGCCGCGGCGACCCGCGCTATGTGCTGCTGCTGGCCTGGAGCGTGCTGGTGCTG CTGTTCTTCAGCGCCAGCCCGGGCAAACGCGAGGTCTATATCTTCCCGATGCTGCCGGCACTGTGCATTGCCGCGGCGCC GTTGCTGGCGGGGTTGTTGCGCCGGCGCGGCGTGCGGGCGCTGCTGACCGGGTATGTGCTGCTGCTTGCCGTCGCCGGCC TGGCGCTGGGCGGCGGCATTGCGTTGCATCTGCACTGGGCCGAGAACACCGCAGTCAAGCGCGGCATGGAGCTTGCCTCG CTGCAGCCGGTGGGTTTCTGGTTGATCGGCCTGGGCGTGGTCGGCCTGGCGGCGAGTGCATGGTCGCGCGGTAAACGCGC GGGCACCGCGTTGGTGGTGATGACCGCCGCGCTGTGGACGGTGTTCGGCCTGGGGTTGATGCCGGCGCTGGATCCTTATA GTTCGTCCTCACGTCTGATGCAGCGCGTGGGCCAGCGCATCGGCCCGGACGCGCAGCTGGGCATGCTGGCCTGGCGCGAG CAGAACCTGCTGCAGGCCGATCGCCCGGTGACCGATTTCGGCTTCAAGGCGAGCTGGCAGGACCAATGGGCCAAGGCCGG CCCGTGGCTTGCGCAAGCGCCGCACACTCGCTGGCTGTTCGTGCTCAAGCAGGCGGTGCCGGCATGTATCGATCCGGCGC AACGCATCGATATCGGCGAGTCCAATCGCAATCAATGGCAGTTGCTGCCCGGCACGGCGTGGCATGCCGGTTGCATCGCC GCTGCGTCCGACGCCGAACAAACCGGTGGCGAAGGCGATGCAGACTGA
Upstream 100 bases:
>100_bases GATGCCTGCGCTGCGATGCGCGATCACGCAGGCTCGGCTCCGACAAATTTCCGACCCACTTGCCAGATAGTGTCTGCCCG CATTTACTCAGGGCGTGCGC
Downstream 100 bases:
>100_bases ACGCTTGGTGTCGGGTTAACGGCCGGGCAACCCCGGTCCGACCGCTTTCCGACATCCGGGTTTCGAAGATGTCGGGCATT GACACAGGCCGCCATCTCGA
Product: putative glycosyltransferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase 2; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase 2 [H]
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MSPAIAASSSRQRALLAALLTIVVSLLAGLGMRQPNPPDEPRFVLAARTMVETGQWLLPHRGSELYAEKPPAFMWLQAAT YELVPHWPVAFLLPSLLAALATLWLTWDIARRLWTRRVAAHAVLALFTVLQFGLMAKRAQIDMVLVALTTLSLWGLLRHL LRGPDWRAWTLGLFAAGVGTVTKGVGFLPLLVLLPWMALRRTHWRVLPARALAGRSWALVLPAFVAGTAVWLGPLGIALW HSDDTQLHAYAHELLFKQTGTRYAHAWHHVKPFWYYLQVIATLWLPGCLLLPWLLPAWWRRLRRGDPRYVLLLAWSVLVL LFFSASPGKREVYIFPMLPALCIAAAPLLAGLLRRRGVRALLTGYVLLLAVAGLALGGGIALHLHWAENTAVKRGMELAS LQPVGFWLIGLGVVGLAASAWSRGKRAGTALVVMTAALWTVFGLGLMPALDPYSSSSRLMQRVGQRIGPDAQLGMLAWRE QNLLQADRPVTDFGFKASWQDQWAKAGPWLAQAPHTRWLFVLKQAVPACIDPAQRIDIGESNRNQWQLLPGTAWHAGCIA AASDAEQTGGEGDAD
Sequences:
>Translated_575_residues MSPAIAASSSRQRALLAALLTIVVSLLAGLGMRQPNPPDEPRFVLAARTMVETGQWLLPHRGSELYAEKPPAFMWLQAAT YELVPHWPVAFLLPSLLAALATLWLTWDIARRLWTRRVAAHAVLALFTVLQFGLMAKRAQIDMVLVALTTLSLWGLLRHL LRGPDWRAWTLGLFAAGVGTVTKGVGFLPLLVLLPWMALRRTHWRVLPARALAGRSWALVLPAFVAGTAVWLGPLGIALW HSDDTQLHAYAHELLFKQTGTRYAHAWHHVKPFWYYLQVIATLWLPGCLLLPWLLPAWWRRLRRGDPRYVLLLAWSVLVL LFFSASPGKREVYIFPMLPALCIAAAPLLAGLLRRRGVRALLTGYVLLLAVAGLALGGGIALHLHWAENTAVKRGMELAS LQPVGFWLIGLGVVGLAASAWSRGKRAGTALVVMTAALWTVFGLGLMPALDPYSSSSRLMQRVGQRIGPDAQLGMLAWRE QNLLQADRPVTDFGFKASWQDQWAKAGPWLAQAPHTRWLFVLKQAVPACIDPAQRIDIGESNRNQWQLLPGTAWHAGCIA AASDAEQTGGEGDAD >Mature_574_residues SPAIAASSSRQRALLAALLTIVVSLLAGLGMRQPNPPDEPRFVLAARTMVETGQWLLPHRGSELYAEKPPAFMWLQAATY ELVPHWPVAFLLPSLLAALATLWLTWDIARRLWTRRVAAHAVLALFTVLQFGLMAKRAQIDMVLVALTTLSLWGLLRHLL RGPDWRAWTLGLFAAGVGTVTKGVGFLPLLVLLPWMALRRTHWRVLPARALAGRSWALVLPAFVAGTAVWLGPLGIALWH SDDTQLHAYAHELLFKQTGTRYAHAWHHVKPFWYYLQVIATLWLPGCLLLPWLLPAWWRRLRRGDPRYVLLLAWSVLVLL FFSASPGKREVYIFPMLPALCIAAAPLLAGLLRRRGVRALLTGYVLLLAVAGLALGGGIALHLHWAENTAVKRGMELASL QPVGFWLIGLGVVGLAASAWSRGKRAGTALVVMTAALWTVFGLGLMPALDPYSSSSRLMQRVGQRIGPDAQLGMLAWREQ NLLQADRPVTDFGFKASWQDQWAKAGPWLAQAPHTRWLFVLKQAVPACIDPAQRIDIGESNRNQWQLLPGTAWHAGCIAA ASDAEQTGGEGDAD
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=349, Percent_Identity=27.2206303724928, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 63374; Mature: 63243
Theoretical pI: Translated: 11.01; Mature: 11.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPAIAASSSRQRALLAALLTIVVSLLAGLGMRQPNPPDEPRFVLAARTMVETGQWLLPH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHCCCEECCC RGSELYAEKPPAFMWLQAATYELVPHWPVAFLLPSLLAALATLWLTWDIARRLWTRRVAA CCCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HAVLALFTVLQFGLMAKRAQIDMVLVALTTLSLWGLLRHLLRGPDWRAWTLGLFAAGVGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VTKGVGFLPLLVLLPWMALRRTHWRVLPARALAGRSWALVLPAFVAGTAVWLGPLGIALW HHHCHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEE HSDDTQLHAYAHELLFKQTGTRYAHAWHHVKPFWYYLQVIATLWLPGCLLLPWLLPAWWR CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RLRRGDPRYVLLLAWSVLVLLFFSASPGKREVYIFPMLPALCIAAAPLLAGLLRRRGVRA HHHCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHH LLTGYVLLLAVAGLALGGGIALHLHWAENTAVKRGMELASLQPVGFWLIGLGVVGLAASA HHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHH WSRGKRAGTALVVMTAALWTVFGLGLMPALDPYSSSSRLMQRVGQRIGPDAQLGMLAWRE HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH QNLLQADRPVTDFGFKASWQDQWAKAGPWLAQAPHTRWLFVLKQAVPACIDPAQRIDIGE HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCC SNRNQWQLLPGTAWHAGCIAAASDAEQTGGEGDAD CCCCCEEECCCCCHHHHHHHCCCCHHHCCCCCCCC >Mature Secondary Structure SPAIAASSSRQRALLAALLTIVVSLLAGLGMRQPNPPDEPRFVLAARTMVETGQWLLPH CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHCCCEECCC RGSELYAEKPPAFMWLQAATYELVPHWPVAFLLPSLLAALATLWLTWDIARRLWTRRVAA CCCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HAVLALFTVLQFGLMAKRAQIDMVLVALTTLSLWGLLRHLLRGPDWRAWTLGLFAAGVGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VTKGVGFLPLLVLLPWMALRRTHWRVLPARALAGRSWALVLPAFVAGTAVWLGPLGIALW HHHCHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEE HSDDTQLHAYAHELLFKQTGTRYAHAWHHVKPFWYYLQVIATLWLPGCLLLPWLLPAWWR CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RLRRGDPRYVLLLAWSVLVLLFFSASPGKREVYIFPMLPALCIAAAPLLAGLLRRRGVRA HHHCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHH LLTGYVLLLAVAGLALGGGIALHLHWAENTAVKRGMELASLQPVGFWLIGLGVVGLAASA HHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHH WSRGKRAGTALVVMTAALWTVFGLGLMPALDPYSSSSRLMQRVGQRIGPDAQLGMLAWRE HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH QNLLQADRPVTDFGFKASWQDQWAKAGPWLAQAPHTRWLFVLKQAVPACIDPAQRIDIGE HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCC SNRNQWQLLPGTAWHAGCIAAASDAEQTGGEGDAD CCCCCEEECCCCCHHHHHHHCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA