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The map label for this gene is rnk [H]

Identifier: 78046496

GI number: 78046496

Start: 1067818

End: 1068258

Strand: Reverse

Name: rnk [H]

Synonym: XCV0940

Alternate gene names: 78046496

Gene position: 1068258-1067818 (Counterclockwise)

Preceding gene: 78046497

Following gene: 78046495

Centisome position: 20.63

GC content: 67.8

Gene sequence:

>441_bases
ATGACTTCGCAACACCACAGCGGCTTGCCGCCATCCATCCTGGTGTCCAGCCACGACCTTGCCCGGCTTGAGGCATTGCT
CGATTCGCCAGCCTTCAACAAGCATCCCGCCGCCACCGCGCTGAGCGACGAACTGGGCCGCGCCCGCGTGCTGCCGCCCG
ACCAGATTCCCGGCGATGTTGTCACCATGCACTCACGCATCGAATGCGAGGACCAACTGCATGGCGAACGGCACACGCTC
ACCCTTGTGTACCCGCATGAGGCCGATGTGCAGCACGGCCGCATCTCGGTGCTCGCGCCGGTCGGCAGCGCGTTGCTCGG
CCTGTCGGTCGGCCAGAGCATCGATTGGCGTACGCCCGACGGACGCGACCTGCGCCTGCGCGTGACTGCCGTGCACGACC
AACCCGCAGCAGCGGGCGACTTCCGGCGCGCGGCGCGCTAA

Upstream 100 bases:

>100_bases
TTGGCTTCGCACCATCCATGCATTGCGATCAGCCGCCGGCGCCCTCATCTTGTCAGTGCTGCTTGCCATGTCGGCGAGCC
GTTTCTATGAGGAGACTGCC

Downstream 100 bases:

>100_bases
CGTAGCGCGCTGCGCCATCCCCGACCCGTTCCACGATTCGAGAGAACCCGCATGACTGCATCCCCCTCCAAGCTCGCCCA
GCTGCGTGAACTGTCCGTTG

Product: regulator of nucleoside diphosphate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTSQHHSGLPPSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTL
TLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPDGRDLRLRVTAVHDQPAAAGDFRRAAR

Sequences:

>Translated_146_residues
MTSQHHSGLPPSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTL
TLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPDGRDLRLRVTAVHDQPAAAGDFRRAAR
>Mature_145_residues
TSQHHSGLPPSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLT
LVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPDGRDLRLRVTAVHDQPAAAGDFRRAAR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=131, Percent_Identity=44.2748091603053, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15818; Mature: 15687

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQHHSGLPPSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDV
CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCE
VTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPD
EEECCCCCCHHHCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCC
GRDLRLRVTAVHDQPAAAGDFRRAAR
CCEEEEEEEEECCCCCCCCCHHHHCC
>Mature Secondary Structure 
TSQHHSGLPPSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDV
CCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCE
VTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPD
EEECCCCCCHHHCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCC
GRDLRLRVTAVHDQPAAAGDFRRAAR
CCEEEEEEEEECCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]