Click here to switch to the map view.

The map label for this gene is hpaF

Identifier: 78045965

GI number: 78045965

Start: 461310

End: 461903

Strand: Reverse

Name: hpaF

Synonym: XCV0409

Alternate gene names: NA

Gene position: 461903-461310 (Counterclockwise)

Preceding gene: 78045966

Following gene: 78045964

Centisome position: 8.92

GC content: 64.14

Gene sequence:

>594_bases
ATGTTCAATGTCAATCGCCTACTCCGCTCTCGCCCGCGAACGGACAACGCCGATCAAGCGCCCGCGCAAGACAGTCCTTC
ACGGCAACCTTCGAACGCAGAGGGCTTGTTGAGCCCCCTGCTCGCGCGGCCGCGACGGCGCGAAGCCACGTCATCGGCAC
ACACGTCGACGCCCAGAAATGCGGCGCAAGGGCGCCTTTTCCGATCGCCTTTGCATCCGTCGAGTCAGCCGGCGGAACTC
GCGGGCGCCTCTTCTGCACCACCGCGCAGCATCGAGCACGACATCGACGATTGGCTTGCGCAAAGCCTACCGATGGCAGA
GCGGGTCCAAACCGGCTACAACCTGCACGACGGGCAGAGAGATACGTCGCGGGAGGTGCTGCAAAGCGTCGCAGACGCAA
TCCGCCGTGCAGCGACCCACCACGGCACCGCGCTTGTTTTCGACTACGGCCTGCCTGCCACGACGCTACCTGACGCGATC
GGCCGGCTCGAGGAGCTACAGAAATTGACGCTGATTCATACCAGTCGCTGCCAGACAGCCTGGGGCAGCTGCGCCAGCTC
CGCCATTTACAGATCACTGGTGCACCGGGCCTGA

Upstream 100 bases:

>100_bases
GCGATGCAGCCTCTTCGCGTTGATGCGGCGATGGCAGTCGCACCGCAGTAGCCTGCACGCTTGAACGCTGCAGCCAGCCG
ACCAAGCAGGGTGTATCTCC

Downstream 100 bases:

>100_bases
AAACGCTGCCGCCCTCGTTGACGCGCCTATCCAATCTGACAACCCTTCAATTGACGATGGTCCCGTTGGACGAATTGCCC
GCAGACTTGGGGCGCATGCA

Product: HpaF protein

Products: NA

Alternate protein names: Hrp-Associated Protein

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MFNVNRLLRSRPRTDNADQAPAQDSPSRQPSNAEGLLSPLLARPRRREATSSAHTSTPRNAAQGRLFRSPLHPSSQPAEL
AGASSAPPRSIEHDIDDWLAQSLPMAERVQTGYNLHDGQRDTSREVLQSVADAIRRAATHHGTALVFDYGLPATTLPDAI
GRLEELQKLTLIHTSRCQTAWGSCASSAIYRSLVHRA

Sequences:

>Translated_197_residues
MFNVNRLLRSRPRTDNADQAPAQDSPSRQPSNAEGLLSPLLARPRRREATSSAHTSTPRNAAQGRLFRSPLHPSSQPAEL
AGASSAPPRSIEHDIDDWLAQSLPMAERVQTGYNLHDGQRDTSREVLQSVADAIRRAATHHGTALVFDYGLPATTLPDAI
GRLEELQKLTLIHTSRCQTAWGSCASSAIYRSLVHRA
>Mature_197_residues
MFNVNRLLRSRPRTDNADQAPAQDSPSRQPSNAEGLLSPLLARPRRREATSSAHTSTPRNAAQGRLFRSPLHPSSQPAEL
AGASSAPPRSIEHDIDDWLAQSLPMAERVQTGYNLHDGQRDTSREVLQSVADAIRRAATHHGTALVFDYGLPATTLPDAI
GRLEELQKLTLIHTSRCQTAWGSCASSAIYRSLVHRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21543; Mature: 21543

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNVNRLLRSRPRTDNADQAPAQDSPSRQPSNAEGLLSPLLARPRRREATSSAHTSTPRN
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCH
AAQGRLFRSPLHPSSQPAELAGASSAPPRSIEHDIDDWLAQSLPMAERVQTGYNLHDGQR
HHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
DTSREVLQSVADAIRRAATHHGTALVFDYGLPATTLPDAIGRLEELQKLTLIHTSRCQTA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGSCASSAIYRSLVHRA
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNVNRLLRSRPRTDNADQAPAQDSPSRQPSNAEGLLSPLLARPRRREATSSAHTSTPRN
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCH
AAQGRLFRSPLHPSSQPAELAGASSAPPRSIEHDIDDWLAQSLPMAERVQTGYNLHDGQR
HHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
DTSREVLQSVADAIRRAATHHGTALVFDYGLPATTLPDAIGRLEELQKLTLIHTSRCQTA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGSCASSAIYRSLVHRA
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA