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The map label for this gene is recO

Identifier: 78044245

GI number: 78044245

Start: 382062

End: 382784

Strand: Direct

Name: recO

Synonym: CHY_0438

Alternate gene names: 78044245

Gene position: 382062-382784 (Clockwise)

Preceding gene: 78044095

Following gene: 78045220

Centisome position: 15.91

GC content: 41.08

Gene sequence:

>723_bases
TTGAAATTTTATTTGGATGAAGGGATTGTGTTAAAGGGTAGTGACTTCGGTGATGGCCACCGAATGTTGACAATTATAAC
GAAAGAGCTGGGAAAAATTAAAGCGGTGGCTTACGGTGCAAAAAAGGTAAAAAGCAAAAAGCGGGGAGCGTTACTGGAAT
TCAGTCGGACCAACATTTATTTGCGGCAAAGTAACGATTATTTTATCGTTGAGCAAGCGGAAGGCATAGAGTATTTTCCC
AATCTTTATGGAAATAAAGATTTGTTACATGCGGCGGGGCAAATTGCGTGGCTGACGGATCGCTTTTGGCCTCTGGGGCA
ACTTAACCCTAAACTATACAATTGGGTTTTATATAGTTTACGGTTACTAAATTCGGGAGTTTGGCCCAAAATTGTGTTAA
GAAATTTTGAATTAAAACTTTTGGCTTTTACCGGCTTTAGACCTATAACCACTCACTGTGCCGTTTGCCGCAAACCTTAC
CGGGGTGAAGTATGGTATTTTGGAGCTGGGGAAGGAGGAATTGTCTGTCCTTCCTGTAGGCCCATAGAGGGGATTTATTT
TGAAATATTTCCGGAAGTGGTAAAAGGGATGAACGCCTTACTTCTTGCTTCACCGGAAAAGTTACCGGAACTTTTATTGG
ATGAGCGGGTAGTGGATAGAGTTAAAACCATCTTGGAATATTTTTTGGGTTATCAATTGGGTGAGCCAATAAGACTTCTT
TAA

Upstream 100 bases:

>100_bases
CAATAAAAAATTTTAAAAATTCAAAAAATTATTGCTAATAGTTTTTTAAATAAACAATGATATAATTATGACAGCATATT
GTTCAGAAGAGGGATGGATA

Downstream 100 bases:

>100_bases
CTTGACTTTTTTCTTAGGCTTTGGTAAATTATTTCACAACAAATTAATAATGGATTGGCAGTGAACCGGAGGAGTAGCTG
TGATTTCCCTTAAAGAGAGC

Product: putative DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKFYLDEGIVLKGSDFGDGHRMLTIITKELGKIKAVAYGAKKVKSKKRGALLEFSRTNIYLRQSNDYFIVEQAEGIEYFP
NLYGNKDLLHAAGQIAWLTDRFWPLGQLNPKLYNWVLYSLRLLNSGVWPKIVLRNFELKLLAFTGFRPITTHCAVCRKPY
RGEVWYFGAGEGGIVCPSCRPIEGIYFEIFPEVVKGMNALLLASPEKLPELLLDERVVDRVKTILEYFLGYQLGEPIRLL

Sequences:

>Translated_240_residues
MKFYLDEGIVLKGSDFGDGHRMLTIITKELGKIKAVAYGAKKVKSKKRGALLEFSRTNIYLRQSNDYFIVEQAEGIEYFP
NLYGNKDLLHAAGQIAWLTDRFWPLGQLNPKLYNWVLYSLRLLNSGVWPKIVLRNFELKLLAFTGFRPITTHCAVCRKPY
RGEVWYFGAGEGGIVCPSCRPIEGIYFEIFPEVVKGMNALLLASPEKLPELLLDERVVDRVKTILEYFLGYQLGEPIRLL
>Mature_240_residues
MKFYLDEGIVLKGSDFGDGHRMLTIITKELGKIKAVAYGAKKVKSKKRGALLEFSRTNIYLRQSNDYFIVEQAEGIEYFP
NLYGNKDLLHAAGQIAWLTDRFWPLGQLNPKLYNWVLYSLRLLNSGVWPKIVLRNFELKLLAFTGFRPITTHCAVCRKPY
RGEVWYFGAGEGGIVCPSCRPIEGIYFEIFPEVVKGMNALLLASPEKLPELLLDERVVDRVKTILEYFLGYQLGEPIRLL

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_CARHZ (Q3AEY5)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359299.1
- STRING:   Q3AEY5
- GeneID:   3727362
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0438
- NMPDR:   fig|246194.3.peg.829
- TIGR:   CHY_0438
- eggNOG:   COG1381
- OMA:   RMIERIE
- BioCyc:   CHYD246194:CHY_0438-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27474; Mature: 27474

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYLDEGIVLKGSDFGDGHRMLTIITKELGKIKAVAYGAKKVKSKKRGALLEFSRTNIY
CEEEECCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEE
LRQSNDYFIVEQAEGIEYFPNLYGNKDLLHAAGQIAWLTDRFWPLGQLNPKLYNWVLYSL
EEECCCEEEEEECCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHH
RLLNSGVWPKIVLRNFELKLLAFTGFRPITTHCAVCRKPYRGEVWYFGAGEGGIVCPSCR
HHHCCCCCHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCEECCCCC
PIEGIYFEIFPEVVKGMNALLLASPEKLPELLLDERVVDRVKTILEYFLGYQLGEPIRLL
CCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure
MKFYLDEGIVLKGSDFGDGHRMLTIITKELGKIKAVAYGAKKVKSKKRGALLEFSRTNIY
CEEEECCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEE
LRQSNDYFIVEQAEGIEYFPNLYGNKDLLHAAGQIAWLTDRFWPLGQLNPKLYNWVLYSL
EEECCCEEEEEECCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHH
RLLNSGVWPKIVLRNFELKLLAFTGFRPITTHCAVCRKPYRGEVWYFGAGEGGIVCPSCR
HHHCCCCCHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCEECCCCC
PIEGIYFEIFPEVVKGMNALLLASPEKLPELLLDERVVDRVKTILEYFLGYQLGEPIRLL
CCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA