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The map label for this gene is rpfG [H]

Identifier: 78043440

GI number: 78043440

Start: 117379

End: 118584

Strand: Direct

Name: rpfG [H]

Synonym: CHY_0135

Alternate gene names: 78043440

Gene position: 117379-118584 (Clockwise)

Preceding gene: 78042880

Following gene: 78044972

Centisome position: 4.89

GC content: 39.8

Gene sequence:

>1206_bases
ATGGTTACTTTCAATCGTTTTAATTTTATAAAAAATATGTCCAAAGCGTTAGATTTAAGTATGGAGGGGTTGCAGGACCA
TCATCGGCGGGTGGCTTACATTGCTTACCGTTTGGGAGAAAGGTACAATTTAACGCCAACACAAAAGCGGGATTTGGTGT
ATTTGGGCTTAATTCATGATATAGGAATTTTAAGATGGGATGCCAATGATGAAAGAATCCGGCAAATAGCGGAAAATGAG
TTTGAACATTGCCGGCGGGGGGCACTTATTTTAAAAAATTCTTATTTCGACCATTATGCCAGGTATATTTTCAGTCACCA
CGACCATTATGTCGGAAAAAACCCGTCGGGTCTTACGGGAGAAGAAATACCCTTACTTTGCAGGGTGTTGTTTTTGGCCG
ATAGAATAGCGGTGAATTTTAATCCTGAAAGCTGTATCCTGGAAAAGGTGAAATATTGGCGGGAATACTTTACTAAGCGA
AAAATTTTTGATCCCCGTCTTTTAGAGGTGTTTTTTGAACTAGCGGAAGCGGAAGAATTTTGGCTAACCCTGGGCGATAG
CGATATTTTAAATCAACGCTTGGAGGAAATTGGTTATGCAGAAGAACTAATAAATTTACCGGATATGATTGGTTTAGCGG
AATTATTTGCTAAGCTTGTAGACCATAAGTCCCGGTTTACTTTTTTCCATTCGCAGTTAGTAGGGGAAATTGCGGAATAT
TTAGGAAAAGTTTTAAATTTTGGCCAAGAGGATGTTAGCTTTCTTAAAATAGCCGGACTTTTACATGATATAGGTAAAAT
GTCCGTTCCCGAAAGTATTTTGGAAAAACCCGGGGACCTTACCGAAGAAGAGTTTTTGTGTATGAAGAAACATAGTTTTT
ACACTTACTATCTTTTAAACGGGGTGTTTCCGGAAAAAATAGTAAAAGTGGCCGCCTATCATCACGAAAAACTTGATGGC
TCGGGATATCCCTTTAAGAAAAAAGGCGAGGAATTGGGCTTTGAGGAGCGTTTGCTGGCGGTTATCGATATTTTTGTTGC
TCTTTTGGAAGAGCGGCCGTACCGCAAAGGGCTTGACTACCGGGAGATTAAAGGTATTATGGAAGAGATGGGACAAAAAA
ATAAAATTGATAGGGAATTAGTGCGGGTTGTCCTGGATAATTACCCGGAGTTACAGGCGATAAAGAAAAAACTTAGTGAA
GCCTGA

Upstream 100 bases:

>100_bases
CAGGAGTCTTCCAAAGTTGCTAAAGAAATAACGGAAATGATTAAACATAATATGGAGGAAATAGAAAAAATTCGCCGGCA
GAATAGCGGGATGATGTAAG

Downstream 100 bases:

>100_bases
AAAAAGTTTTTTTGGCAGCAATCTCCTTTTTTCCGGGGAAAGCTAAACACAAAAGACTTGACGAAAGGGGTTATCCGTTT
AAAATTAAAGGGGAAGGTCT

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MVTFNRFNFIKNMSKALDLSMEGLQDHHRRVAYIAYRLGERYNLTPTQKRDLVYLGLIHDIGILRWDANDERIRQIAENE
FEHCRRGALILKNSYFDHYARYIFSHHDHYVGKNPSGLTGEEIPLLCRVLFLADRIAVNFNPESCILEKVKYWREYFTKR
KIFDPRLLEVFFELAEAEEFWLTLGDSDILNQRLEEIGYAEELINLPDMIGLAELFAKLVDHKSRFTFFHSQLVGEIAEY
LGKVLNFGQEDVSFLKIAGLLHDIGKMSVPESILEKPGDLTEEEFLCMKKHSFYTYYLLNGVFPEKIVKVAAYHHEKLDG
SGYPFKKKGEELGFEERLLAVIDIFVALLEERPYRKGLDYREIKGIMEEMGQKNKIDRELVRVVLDNYPELQAIKKKLSE
A

Sequences:

>Translated_401_residues
MVTFNRFNFIKNMSKALDLSMEGLQDHHRRVAYIAYRLGERYNLTPTQKRDLVYLGLIHDIGILRWDANDERIRQIAENE
FEHCRRGALILKNSYFDHYARYIFSHHDHYVGKNPSGLTGEEIPLLCRVLFLADRIAVNFNPESCILEKVKYWREYFTKR
KIFDPRLLEVFFELAEAEEFWLTLGDSDILNQRLEEIGYAEELINLPDMIGLAELFAKLVDHKSRFTFFHSQLVGEIAEY
LGKVLNFGQEDVSFLKIAGLLHDIGKMSVPESILEKPGDLTEEEFLCMKKHSFYTYYLLNGVFPEKIVKVAAYHHEKLDG
SGYPFKKKGEELGFEERLLAVIDIFVALLEERPYRKGLDYREIKGIMEEMGQKNKIDRELVRVVLDNYPELQAIKKKLSE
A
>Mature_401_residues
MVTFNRFNFIKNMSKALDLSMEGLQDHHRRVAYIAYRLGERYNLTPTQKRDLVYLGLIHDIGILRWDANDERIRQIAENE
FEHCRRGALILKNSYFDHYARYIFSHHDHYVGKNPSGLTGEEIPLLCRVLFLADRIAVNFNPESCILEKVKYWREYFTKR
KIFDPRLLEVFFELAEAEEFWLTLGDSDILNQRLEEIGYAEELINLPDMIGLAELFAKLVDHKSRFTFFHSQLVGEIAEY
LGKVLNFGQEDVSFLKIAGLLHDIGKMSVPESILEKPGDLTEEEFLCMKKHSFYTYYLLNGVFPEKIVKVAAYHHEKLDG
SGYPFKKKGEELGFEERLLAVIDIFVALLEERPYRKGLDYREIKGIMEEMGQKNKIDRELVRVVLDNYPELQAIKKKLSE
A

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 46980; Mature: 46980

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTFNRFNFIKNMSKALDLSMEGLQDHHRRVAYIAYRLGERYNLTPTQKRDLVYLGLIHD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHH
IGILRWDANDERIRQIAENEFEHCRRGALILKNSYFDHYARYIFSHHDHYVGKNPSGLTG
CCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EEIPLLCRVLFLADRIAVNFNPESCILEKVKYWREYFTKRKIFDPRLLEVFFELAEAEEF
CHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
WLTLGDSDILNQRLEEIGYAEELINLPDMIGLAELFAKLVDHKSRFTFFHSQLVGEIAEY
EEECCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGKVLNFGQEDVSFLKIAGLLHDIGKMSVPESILEKPGDLTEEEFLCMKKHSFYTYYLLN
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHCCCEEEHHHH
GVFPEKIVKVAAYHHEKLDGSGYPFKKKGEELGFEERLLAVIDIFVALLEERPYRKGLDY
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCH
REIKGIMEEMGQKNKIDRELVRVVLDNYPELQAIKKKLSEA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MVTFNRFNFIKNMSKALDLSMEGLQDHHRRVAYIAYRLGERYNLTPTQKRDLVYLGLIHD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHH
IGILRWDANDERIRQIAENEFEHCRRGALILKNSYFDHYARYIFSHHDHYVGKNPSGLTG
CCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EEIPLLCRVLFLADRIAVNFNPESCILEKVKYWREYFTKRKIFDPRLLEVFFELAEAEEF
CHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
WLTLGDSDILNQRLEEIGYAEELINLPDMIGLAELFAKLVDHKSRFTFFHSQLVGEIAEY
EEECCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGKVLNFGQEDVSFLKIAGLLHDIGKMSVPESILEKPGDLTEEEFLCMKKHSFYTYYLLN
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHCCCEEEHHHH
GVFPEKIVKVAAYHHEKLDGSGYPFKKKGEELGFEERLLAVIDIFVALLEERPYRKGLDY
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCH
REIKGIMEEMGQKNKIDRELVRVVLDNYPELQAIKKKLSEA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]