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The map label for this gene is tse [H]

Identifier: 78042880

GI number: 78042880

Start: 116625

End: 117377

Strand: Direct

Name: tse [H]

Synonym: CHY_0134

Alternate gene names: 78042880

Gene position: 116625-117377 (Clockwise)

Preceding gene: 78044660

Following gene: 78043440

Centisome position: 4.86

GC content: 40.24

Gene sequence:

>753_bases
ATGGAAGACAGCGTTCTTTTGAGCCGTTACCAGGAAACCTTAAGTTTTTTGAATTTAACGGCGGAAGACCTGCAATTAAT
GGCCGAATTTAAAGAGTTATTTATCCAAAAAGCTCAGGAGTTTGTCAATAAATTTTATCAACATTTAACTAAATTTCCAT
ATTTACAGGAATTAATTAAAAAACACAGTACCGTTGAGAAGTTATCCAAAACCCAGGCGGAGTATTTTATTTCATTAACC
TCGGAGAAGATTGATGCTGATTATATTAAAAACCGCCTGGCAGTCGGGAAAAAACATATGGAAATTGCCCTTTACCCCAA
CTGGTATATAGGGGCATACCGTTTATATTACGAAGTTGTCGGGGAATTGGTAGCCCGGAAATATTCTCCCGGCACGGAGT
TGTATTTTAAGGCGGTAAATGCTTTTTACAAACGAATTAATTTTGATATCCAACTGGCGATCGAAAATTATATTGCCGAG
CAATTAAAATACTTGGCAGCGATTCAAGAGCAGGTAGCGGATGCTGCCGGCTTTATTTCCTCGATTGCCACAAAAACAAA
TATTTTAGCCTTGAATGCGTCAATTGAAGCGGGAAGAGCGGGGGAACACGGCCGGGCTTTCGGCGTAGTGGCCCAGGAAG
TGCGCAAACTGGCTCAGGAGTCTTCCAAAGTTGCTAAAGAAATAACGGAAATGATTAAACATAATATGGAGGAAATAGAA
AAAATTCGCCGGCAGAATAGCGGGATGATGTAA

Upstream 100 bases:

>100_bases
TATTAGTATTAATAATAAATTGCAGTAGGAAGGTAAAGATTTCGGTACGGGATGCAAGTAACCTTTTACTTCTGAAATTT
GGCAAATAGGGGGATGACCT

Downstream 100 bases:

>100_bases
GATGGTTACTTTCAATCGTTTTAATTTTATAAAAAATATGTCCAAAGCGTTAGATTTAAGTATGGAGGGGTTGCAGGACC
ATCATCGGCGGGTGGCTTAC

Product: signal tranducer domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MEDSVLLSRYQETLSFLNLTAEDLQLMAEFKELFIQKAQEFVNKFYQHLTKFPYLQELIKKHSTVEKLSKTQAEYFISLT
SEKIDADYIKNRLAVGKKHMEIALYPNWYIGAYRLYYEVVGELVARKYSPGTELYFKAVNAFYKRINFDIQLAIENYIAE
QLKYLAAIQEQVADAAGFISSIATKTNILALNASIEAGRAGEHGRAFGVVAQEVRKLAQESSKVAKEITEMIKHNMEEIE
KIRRQNSGMM

Sequences:

>Translated_250_residues
MEDSVLLSRYQETLSFLNLTAEDLQLMAEFKELFIQKAQEFVNKFYQHLTKFPYLQELIKKHSTVEKLSKTQAEYFISLT
SEKIDADYIKNRLAVGKKHMEIALYPNWYIGAYRLYYEVVGELVARKYSPGTELYFKAVNAFYKRINFDIQLAIENYIAE
QLKYLAAIQEQVADAAGFISSIATKTNILALNASIEAGRAGEHGRAFGVVAQEVRKLAQESSKVAKEITEMIKHNMEEIE
KIRRQNSGMM
>Mature_250_residues
MEDSVLLSRYQETLSFLNLTAEDLQLMAEFKELFIQKAQEFVNKFYQHLTKFPYLQELIKKHSTVEKLSKTQAEYFISLT
SEKIDADYIKNRLAVGKKHMEIALYPNWYIGAYRLYYEVVGELVARKYSPGTELYFKAVNAFYKRINFDIQLAIENYIAE
QLKYLAAIQEQVADAAGFISSIATKTNILALNASIEAGRAGEHGRAFGVVAQEVRKLAQESSKVAKEITEMIKHNMEEIE
KIRRQNSGMM

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=85, Percent_Identity=42.3529411764706, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788195, Length=83, Percent_Identity=44.578313253012, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788194, Length=80, Percent_Identity=45, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787690, Length=82, Percent_Identity=47.5609756097561, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789453, Length=88, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 28779; Mature: 28779

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDSVLLSRYQETLSFLNLTAEDLQLMAEFKELFIQKAQEFVNKFYQHLTKFPYLQELIK
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KHSTVEKLSKTQAEYFISLTSEKIDADYIKNRLAVGKKHMEIALYPNWYIGAYRLYYEVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEECCCHHHHHHHHHHHHH
GELVARKYSPGTELYFKAVNAFYKRINFDIQLAIENYIAEQLKYLAAIQEQVADAAGFIS
HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIATKTNILALNASIEAGRAGEHGRAFGVVAQEVRKLAQESSKVAKEITEMIKHNMEEIE
HHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIRRQNSGMM
HHHHHCCCCC
>Mature Secondary Structure
MEDSVLLSRYQETLSFLNLTAEDLQLMAEFKELFIQKAQEFVNKFYQHLTKFPYLQELIK
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KHSTVEKLSKTQAEYFISLTSEKIDADYIKNRLAVGKKHMEIALYPNWYIGAYRLYYEVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEECCCHHHHHHHHHHHHH
GELVARKYSPGTELYFKAVNAFYKRINFDIQLAIENYIAEQLKYLAAIQEQVADAAGFIS
HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIATKTNILALNASIEAGRAGEHGRAFGVVAQEVRKLAQESSKVAKEITEMIKHNMEEIE
HHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIRRQNSGMM
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]