| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is gmk [H]
Identifier: 77461770
GI number: 77461770
Start: 6217332
End: 6217952
Strand: Direct
Name: gmk [H]
Synonym: Pfl01_5549
Alternate gene names: 77461770
Gene position: 6217332-6217952 (Clockwise)
Preceding gene: 77461769
Following gene: 77461771
Centisome position: 96.57
GC content: 59.42
Gene sequence:
>621_bases ATGACCCACAGCACCGGCACCCTGTACATCATTTCCGCCCCTTCGGGTGCGGGCAAGAGCAGTCTGGTCAAGGCCCTGAC CGACACCAATCCGGACATTCGCGTCTCGATTTCCCACACCACCCGCGCCATGCGCCCGGGTGAAGTGGACGGCGTGAACT ATCACTTCGTGACCCGCGAAGAGTTCGTGAAAATGGGCGAGCACGGCGATTTTCTGGAACGCGCCGAAGTCTTCGGCAAC TTCTACGGCACCTCGCAAAGCCGCCTACAGCAGACCCTGGACGAAGGCCACGACCTGATTCTGGAAATCGACTGGCAAGG CGCCGAGCAAGTGCGCAAGCTGATGCCGCAGGCCCGTTCGATCTTCATCCTGCCGCCATCACTGCAGGCCCTGCACCAGC GCCTGACCAACCGTGGCCAGGACAGCGACGAGATCATCGATGGCCGGATGCGTGAAGCGGTCAGCGAAATGAGCCACTAC GTCGAGTACGACTACCTGATCATCAACGACGATTTCGCCCATGCGCTGGACGATCTGAAGGCGATTTTCCGCGCCAATCA GTTGCAACAGAAACGTCAGCAAGTGCGTTTCGGCAAATTGCTGGCTGAATTGCTGGGCTGA
Upstream 100 bases:
>100_bases GGCCTTCGACCCGCGCAGCACACAGGCAGCGGTCAACCTCAAGGTGTTGATCGAGCAGATGCGCGAACAAGTGCAGAATA TTGAGTAAGGCTACCCCGAC
Downstream 100 bases:
>100_bases AACAGCACTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGCAGCGCGTTGAAGAGTCTGGTCAAAAAATCAGCG CTTCCCTAATCGCTGGTGAT
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MTHSTGTLYIISAPSGAGKSSLVKALTDTNPDIRVSISHTTRAMRPGEVDGVNYHFVTREEFVKMGEHGDFLERAEVFGN FYGTSQSRLQQTLDEGHDLILEIDWQGAEQVRKLMPQARSIFILPPSLQALHQRLTNRGQDSDEIIDGRMREAVSEMSHY VEYDYLIINDDFAHALDDLKAIFRANQLQQKRQQVRFGKLLAELLG
Sequences:
>Translated_206_residues MTHSTGTLYIISAPSGAGKSSLVKALTDTNPDIRVSISHTTRAMRPGEVDGVNYHFVTREEFVKMGEHGDFLERAEVFGN FYGTSQSRLQQTLDEGHDLILEIDWQGAEQVRKLMPQARSIFILPPSLQALHQRLTNRGQDSDEIIDGRMREAVSEMSHY VEYDYLIINDDFAHALDDLKAIFRANQLQQKRQQVRFGKLLAELLG >Mature_205_residues THSTGTLYIISAPSGAGKSSLVKALTDTNPDIRVSISHTTRAMRPGEVDGVNYHFVTREEFVKMGEHGDFLERAEVFGNF YGTSQSRLQQTLDEGHDLILEIDWQGAEQVRKLMPQARSIFILPPSLQALHQRLTNRGQDSDEIIDGRMREAVSEMSHYV EYDYLIINDDFAHALDDLKAIFRANQLQQKRQQVRFGKLLAELLG
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874833, Length=175, Percent_Identity=39.4285714285714, Blast_Score=118, Evalue=4e-27, Organism=Homo sapiens, GI4504221, Length=175, Percent_Identity=39.4285714285714, Blast_Score=118, Evalue=4e-27, Organism=Homo sapiens, GI226874831, Length=175, Percent_Identity=39.4285714285714, Blast_Score=118, Evalue=4e-27, Organism=Homo sapiens, GI14780902, Length=195, Percent_Identity=28.7179487179487, Blast_Score=81, Evalue=5e-16, Organism=Homo sapiens, GI38570142, Length=176, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI21361598, Length=188, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI111154074, Length=162, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI262118259, Length=178, Percent_Identity=30.3370786516854, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4505237, Length=178, Percent_Identity=30.3370786516854, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI262118263, Length=178, Percent_Identity=30.3370786516854, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI262118255, Length=178, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=4e-12, Organism=Escherichia coli, GI1790080, Length=205, Percent_Identity=59.5121951219512, Blast_Score=246, Evalue=1e-66, Organism=Caenorhabditis elegans, GI193203132, Length=180, Percent_Identity=32.7777777777778, Blast_Score=106, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17508835, Length=180, Percent_Identity=32.7777777777778, Blast_Score=106, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17557440, Length=160, Percent_Identity=26.25, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6320662, Length=177, Percent_Identity=41.8079096045198, Blast_Score=134, Evalue=1e-32, Organism=Drosophila melanogaster, GI21356141, Length=198, Percent_Identity=33.8383838383838, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI45554481, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI85724806, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007136, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24640542, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI45554489, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI161077626, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI221330166, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221330164, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221330162, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 23348; Mature: 23216
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS00856 GUANYLATE_KINASE_1 ; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHSTGTLYIISAPSGAGKSSLVKALTDTNPDIRVSISHTTRAMRPGEVDGVNYHFVTRE CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCEEEEECHH EFVKMGEHGDFLERAEVFGNFYGTSQSRLQQTLDEGHDLILEIDWQGAEQVRKLMPQARS HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCE IFILPPSLQALHQRLTNRGQDSDEIIDGRMREAVSEMSHYVEYDYLIINDDFAHALDDLK EEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHH AIFRANQLQQKRQQVRFGKLLAELLG HHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure THSTGTLYIISAPSGAGKSSLVKALTDTNPDIRVSISHTTRAMRPGEVDGVNYHFVTRE CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCEEEEECHH EFVKMGEHGDFLERAEVFGNFYGTSQSRLQQTLDEGHDLILEIDWQGAEQVRKLMPQARS HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCE IFILPPSLQALHQRLTNRGQDSDEIIDGRMREAVSEMSHYVEYDYLIINDDFAHALDDLK EEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHH AIFRANQLQQKRQQVRFGKLLAELLG HHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA