Click here to switch to the map view.

The map label for this gene is yicC [C]

Identifier: 77461769

GI number: 77461769

Start: 6216456

End: 6217319

Strand: Direct

Name: yicC [C]

Synonym: Pfl01_5548

Alternate gene names: 77461769

Gene position: 6216456-6217319 (Clockwise)

Preceding gene: 77461766

Following gene: 77461770

Centisome position: 96.55

GC content: 64.7

Gene sequence:

>864_bases
ATGGTGCACAGCATGACCGCCTTCGCCCGCGTCGAAAAAGCCGGCGTTCAGGGCACCCTGAGCTGGGAACTGCGCTCGGT
CAACAGCCGCTACCTGGAACCCCACCTGCGCCTGCCTGAGTCGTTCCGCGACCTCGAAGGCGCCGTCCGCGAAGCCCTCC
GCCAGGGCCTGTCGCGCGGCAAACTGGAATGCACCCTGCGCTTCACCGAGGAAAGCACCGGCAAGCCGTTGCAGGTGGAT
CGCGAGCGCGCCGCGCAACTGGTCGCCGCGGCCGAAACGGTTGCCGGCCTGATCAAGAATCCGGCGGCGCTGAACCCGTT
GGAAGTGTTGGCCTGGCCAGGCGTACTGGTCGCCGACGCCACCGACCCGCAGGCGCTGAACGCCGAGGCGCTGGCCTTGT
TCAATCAGGCTCTGAAAGACCTCAAGGCCGGCCGCGAGCGCGAAGGCGCGGAGCTCGCCCGCCTGATCAATGATCGCCTG
ACCTCCATCGAGGAAGATGTGGTGACCCTGCGCGAACTGGTTCCGCAGATGCTCGCCACCCAGCGTCAGAAAGTCCTCGA
CCGCTTTGCCGACATGAAGGCCGAACTGGACCCGCAGCGCCTGGAACAGGAAATGGTCATCCTCGCGCAGAAGAGCGACG
TGGCCGAAGAACTGGATCGCCTGAGCACCCACATCATTGAAGTTCGCCGGGTGCTGAAATCCGGCGGGGCCGCCGGCCGG
CGCCTGGACTTCCTGATGCAAGAGCTCAACCGCGAAGCCAACACACTGGGCTCCAAGGCCTTCGACCCGCGCAGCACACA
GGCAGCGGTCAACCTCAAGGTGTTGATCGAGCAGATGCGCGAACAAGTGCAGAATATTGAGTAA

Upstream 100 bases:

>100_bases
TGCGCTACAATCCTGCGCCTTTGCTGCCAGTCGGCTTAAATTCATTGATATCGAGCTGCGGAGCTTCCATTCGCGCCGAT
CTGTATCGCGAGGTCACCCC

Downstream 100 bases:

>100_bases
GGCTACCCCGACATGACCCACAGCACCGGCACCCTGTACATCATTTCCGCCCCTTCGGGTGCGGGCAAGAGCAGTCTGGT
CAAGGCCCTGACCGACACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MVHSMTAFARVEKAGVQGTLSWELRSVNSRYLEPHLRLPESFRDLEGAVREALRQGLSRGKLECTLRFTEESTGKPLQVD
RERAAQLVAAAETVAGLIKNPAALNPLEVLAWPGVLVADATDPQALNAEALALFNQALKDLKAGREREGAELARLINDRL
TSIEEDVVTLRELVPQMLATQRQKVLDRFADMKAELDPQRLEQEMVILAQKSDVAEELDRLSTHIIEVRRVLKSGGAAGR
RLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE

Sequences:

>Translated_287_residues
MVHSMTAFARVEKAGVQGTLSWELRSVNSRYLEPHLRLPESFRDLEGAVREALRQGLSRGKLECTLRFTEESTGKPLQVD
RERAAQLVAAAETVAGLIKNPAALNPLEVLAWPGVLVADATDPQALNAEALALFNQALKDLKAGREREGAELARLINDRL
TSIEEDVVTLRELVPQMLATQRQKVLDRFADMKAELDPQRLEQEMVILAQKSDVAEELDRLSTHIIEVRRVLKSGGAAGR
RLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE
>Mature_287_residues
MVHSMTAFARVEKAGVQGTLSWELRSVNSRYLEPHLRLPESFRDLEGAVREALRQGLSRGKLECTLRFTEESTGKPLQVD
RERAAQLVAAAETVAGLIKNPAALNPLEVLAWPGVLVADATDPQALNAEALALFNQALKDLKAGREREGAELARLINDRL
TSIEEDVVTLRELVPQMLATQRQKVLDRFADMKAELDPQRLEQEMVILAQKSDVAEELDRLSTHIIEVRRVLKSGGAAGR
RLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=288, Percent_Identity=48.6111111111111, Blast_Score=258, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 32006; Mature: 32006

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHSMTAFARVEKAGVQGTLSWELRSVNSRYLEPHLRLPESFRDLEGAVREALRQGLSRG
CCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
KLECTLRFTEESTGKPLQVDRERAAQLVAAAETVAGLIKNPAALNPLEVLAWPGVLVADA
CEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECC
TDPQALNAEALALFNQALKDLKAGREREGAELARLINDRLTSIEEDVVTLRELVPQMLAT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRQKVLDRFADMKAELDPQRLEQEMVILAQKSDVAEELDRLSTHIIEVRRVLKSGGAAGR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVHSMTAFARVEKAGVQGTLSWELRSVNSRYLEPHLRLPESFRDLEGAVREALRQGLSRG
CCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
KLECTLRFTEESTGKPLQVDRERAAQLVAAAETVAGLIKNPAALNPLEVLAWPGVLVADA
CEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECC
TDPQALNAEALALFNQALKDLKAGREREGAELARLINDRLTSIEEDVVTLRELVPQMLAT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRQKVLDRFADMKAELDPQRLEQEMVILAQKSDVAEELDRLSTHIIEVRRVLKSGGAAGR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]