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The map label for this gene is rpoZ [H]

Identifier: 77461771

GI number: 77461771

Start: 6218121

End: 6218384

Strand: Direct

Name: rpoZ [H]

Synonym: Pfl01_5550

Alternate gene names: 77461771

Gene position: 6218121-6218384 (Clockwise)

Preceding gene: 77461770

Following gene: 77461772

Centisome position: 96.58

GC content: 57.95

Gene sequence:

>264_bases
ATGGCCCGCGTAACCGTTGAAGACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGC
CCGTCAACTGGCCACCGGCGGCAAAGAGCCCCTGGTTCAGTGGGAAAACGACAAACCGACCGTAGTTGCGCTGCGTGAAA
TCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCGAGCAGGAAATCGTCCACGAAGACCCGGTCTTCGCTGCGTTCGAG
GACGAGTCCAACGAGGCCGTCTAA

Upstream 100 bases:

>100_bases
AAAAAATCAGCGCTTCCCTAATCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTG
CATTCGCTCCGAGGAATACC

Downstream 100 bases:

>100_bases
GCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCCTACGGCAGGAGACATCATGCCGAGCATAGACGCCCTCGC
CGATCGCTTATCGACCTACC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMSYEFIAEQEIVHEDPVFAAFE
DESNEAV

Sequences:

>Translated_87_residues
MARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMSYEFIAEQEIVHEDPVFAAFE
DESNEAV
>Mature_86_residues
ARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMSYEFIAEQEIVHEDPVFAAFED
ESNEAV

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=57.8125, Blast_Score=84, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 9907; Mature: 9776

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMS
CCCCCHHHHHHHHHHHHEEEEECCHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
YEFIAEQEIVHEDPVFAAFEDESNEAV
HHHHHHHHHHCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
ARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMS
CCCCHHHHHHHHHHHHEEEEECCHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
YEFIAEQEIVHEDPVFAAFEDESNEAV
HHHHHHHHHHCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA