| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ilvD [H]
Identifier: 77461579
GI number: 77461579
Start: 6017583
End: 6019424
Strand: Direct
Name: ilvD [H]
Synonym: Pfl01_5358
Alternate gene names: 77461579
Gene position: 6017583-6019424 (Clockwise)
Preceding gene: 77461578
Following gene: 77461581
Centisome position: 93.46
GC content: 62.81
Gene sequence:
>1842_bases ATGCCAGATTACCGCTCGAAAACATCCACCCACGGCCGCAACATGGCCGGCGCCCGCGCACTGTGGCGCGCCACCGGGAT GAAAGATGACGACTTCAAGAAGCCGATCATCGCCATTGCCAACTCCTTCACCCAGTTCGTCCCGGGCCACGTCCACCTGA AGGACCTCGGCCAGCTGGTTGCCCGTGAGATCGAACGCGCTGGCGGCGTTGCAAAAGAATTCAACACCATCGCCGTGGAT GACGGCATCGCCATGGGCCACGACGGCATGCTCTATTCGCTGCCGAGCCGCGAGATCATCGCCGACTCCGTCGAGTACAT GGTCAACGCCCACTGCGCCGACGCCATCGTCTGCATCTCGAACTGCGACAAGATCACCCCCGGCATGCTGATGGCCGCGC TGCGCCTGAACATCCCGGTGATCTTCGTCTCCGGCGGTCCGATGGAAGCCGGCAAGACCAAACTGGCCAGCCACGGTCTC GACCTCGTCGACGCCATGGTCATCGCCGCCGACTCCAGCGCTTCTGACGAGAAGGTTGCCGAGTACGAGCGCAGCGCCTG CCCGACCTGCGGTTCGTGCTCCGGCATGTTCACCGCCAACTCGATGAACTGCCTGACCGAGGCCCTGGGCCTTGCATTGC CGGGCAACGGTTCGACCCTGGCCACCCACAGCGACCGCGAACAGCTGTTCCTGCAGGCCGGCCGTACCATCGTCGAGCTG TGCAAACGCTACTACGGCGAGAACGACGAGTCGGTACTGCCGCGCAACATCGCCAACTTCAAGGCGTTCGAGAACGCGAT GATGCTCGACATCGCCATGGGCGGTTCGACCAACACCATCCTGCACTTGCTGGCCGCAGCCCAGGAAGCAGAGATCGACT TCGACCTGCGTGACATTGATCGTCTGTCGCGCAAGGTGCCGCAACTGTGCAAGGTCGCGCCGAACATCCAGAAGTACCAC ATGGAAGACGTGCACCGCGCCGGCGGCATCTTCAGCATTCTCGGTTCGCTGGCCCGTGGCGGCCTGCTGCACACCGACCT GCCGACCGTGCACAGTCGCAGCATGGAAGAAGCCATCGCCAAATGGGACATCACCCAGACCGACGATGAAGCCGTGCATC ATTTCTTCAAGGCCGGCCCGGCCGGCATTCCGACGCAGACCGCGTTCAGCCAGTCGACCCGCTGGGAAACCCTGGACGAC GACCGTGAAAACGGCTGCATCCGCAGCTTTGAACACGCTTATTCGAAAGAAGGCGGCCTGGCCGTGCTGTACGGCAACAT CGCCCTGGACGGCTGCGTGGTGAAAACCGCCGGTGTCGACGAGTCGATCCACGTGTTCGAAGGCAACGCGAAGATCTTCG AAAGCCAGGACAGCGCCGTACGCGGCATCCTCGCCGACGAAGTAAAGGAAGGCGACATCGTCATCATTCGCTACGAAGGC CCGAAAGGCGGCCCGGGCATGCAGGAAATGCTCTATCCGACCTCGTACCTGAAATCCAAAGGCCTGGGCAAAGCCTGCGC CCTGCTGACCGACGGTCGTTTCTCCGGCGGTACGTCCGGCTTGTCCATCGGCCACGCTTCACCAGAGGCTGCGGCCGGCG GCGCGATCGGCCTGGTACAGGACGGCGACAAGGTGCTGATCGACATTCCGAACCGTTCGATCAACCTGCTGATCAGCGAC GAAGAACTGGCGGCACGCCGGGTCGAGCAGGACAAGAAAGGCTGGAAACCGGTCGAACAGCGTCCACGCAAAGTGACCAC CGCCCTCAAGGCCTACGCCCTGCTGGCGACCAGCGCCGACAAGGGTGCTGTGCGTAACAAGGCGATGCTCGACGGGCTGT AA
Upstream 100 bases:
>100_bases GTCATCGGCAACATCAGGACACACGGCCATTTCTGAGTGTTCCAGACGTCAATAGAAGCTCACTCCCCTTTGATACCTGA TTAGCCGCCCGGAGTGCTCC
Downstream 100 bases:
>100_bases GCGTCAAATCGCAGAAACAAAAATGCCCCGCCAAGTGCGGGGCATTTTTTTGCCTTCAGGTTTACTGAATTTCTTCCGGT TTGACGATCACCCAGTTCTT
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 613; Mature: 612
Protein sequence:
>613_residues MPDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLVAREIERAGGVAKEFNTIAVD DGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCISNCDKITPGMLMAALRLNIPVIFVSGGPMEAGKTKLASHGL DLVDAMVIAADSSASDEKVAEYERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSTLATHSDREQLFLQAGRTIVEL CKRYYGENDESVLPRNIANFKAFENAMMLDIAMGGSTNTILHLLAAAQEAEIDFDLRDIDRLSRKVPQLCKVAPNIQKYH MEDVHRAGGIFSILGSLARGGLLHTDLPTVHSRSMEEAIAKWDITQTDDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDD DRENGCIRSFEHAYSKEGGLAVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRYEG PKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQDGDKVLIDIPNRSINLLISD EELAARRVEQDKKGWKPVEQRPRKVTTALKAYALLATSADKGAVRNKAMLDGL
Sequences:
>Translated_613_residues MPDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLVAREIERAGGVAKEFNTIAVD DGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCISNCDKITPGMLMAALRLNIPVIFVSGGPMEAGKTKLASHGL DLVDAMVIAADSSASDEKVAEYERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSTLATHSDREQLFLQAGRTIVEL CKRYYGENDESVLPRNIANFKAFENAMMLDIAMGGSTNTILHLLAAAQEAEIDFDLRDIDRLSRKVPQLCKVAPNIQKYH MEDVHRAGGIFSILGSLARGGLLHTDLPTVHSRSMEEAIAKWDITQTDDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDD DRENGCIRSFEHAYSKEGGLAVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRYEG PKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQDGDKVLIDIPNRSINLLISD EELAARRVEQDKKGWKPVEQRPRKVTTALKAYALLATSADKGAVRNKAMLDGL >Mature_612_residues PDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLVAREIERAGGVAKEFNTIAVDD GIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCISNCDKITPGMLMAALRLNIPVIFVSGGPMEAGKTKLASHGLD LVDAMVIAADSSASDEKVAEYERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSTLATHSDREQLFLQAGRTIVELC KRYYGENDESVLPRNIANFKAFENAMMLDIAMGGSTNTILHLLAAAQEAEIDFDLRDIDRLSRKVPQLCKVAPNIQKYHM EDVHRAGGIFSILGSLARGGLLHTDLPTVHSRSMEEAIAKWDITQTDDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDDD RENGCIRSFEHAYSKEGGLAVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRYEGP KGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQDGDKVLIDIPNRSINLLISDE ELAARRVEQDKKGWKPVEQRPRKVTTALKAYALLATSADKGAVRNKAMLDGL
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=617, Percent_Identity=74.5542949756888, Blast_Score=952, Evalue=0.0, Organism=Escherichia coli, GI1786464, Length=555, Percent_Identity=30.8108108108108, Blast_Score=196, Evalue=3e-51, Organism=Escherichia coli, GI1788157, Length=537, Percent_Identity=29.0502793296089, Blast_Score=194, Evalue=2e-50, Organism=Escherichia coli, GI2367371, Length=510, Percent_Identity=30.9803921568627, Blast_Score=192, Evalue=6e-50, Organism=Saccharomyces cerevisiae, GI6322476, Length=605, Percent_Identity=37.3553719008264, Blast_Score=357, Evalue=4e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 65875; Mature: 65743
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLV CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH AREIERAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS HHHHHHHCCCHHHCCEEEECCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEEEC NCDKITPGMLMAALRLNIPVIFVSGGPMEAGKTKLASHGLDLVDAMVIAADSSASDEKVA CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHEECCCCCCHHHHH EYERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSTLATHSDREQLFLQAGRTIVEL HHHHHCCCCCCCCCCCEECCHHHHHHHHHCEEECCCCCEEEECCHHHHHHHHHCHHHHHH CKRYYGENDESVLPRNIANFKAFENAMMLDIAMGGSTNTILHLLAAAQEAEIDFDLRDID HHHHCCCCCCCCCCCHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHH RLSRKVPQLCKVAPNIQKYHMEDVHRAGGIFSILGSLARGGLLHTDLPTVHSRSMEEAIA HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHH KWDITQTDDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDDDRENGCIRSFEHAYSKEGGL HCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE AVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRYEG EEEECCEEECCEEEEECCCCCCEEEEECCCEEEECCCHHHHHHHHHHCCCCCEEEEEECC PKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQ CCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE DGDKVLIDIPNRSINLLISDEELAARRVEQDKKGWKPVEQRPRKVTTALKAYALLATSAD CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC KGAVRNKAMLDGL CCHHHCCHHHCCC >Mature Secondary Structure PDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLV CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH AREIERAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS HHHHHHHCCCHHHCCEEEECCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEEEC NCDKITPGMLMAALRLNIPVIFVSGGPMEAGKTKLASHGLDLVDAMVIAADSSASDEKVA CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHEECCCCCCHHHHH EYERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSTLATHSDREQLFLQAGRTIVEL HHHHHCCCCCCCCCCCEECCHHHHHHHHHCEEECCCCCEEEECCHHHHHHHHHCHHHHHH CKRYYGENDESVLPRNIANFKAFENAMMLDIAMGGSTNTILHLLAAAQEAEIDFDLRDID HHHHCCCCCCCCCCCHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHH RLSRKVPQLCKVAPNIQKYHMEDVHRAGGIFSILGSLARGGLLHTDLPTVHSRSMEEAIA HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHH KWDITQTDDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDDDRENGCIRSFEHAYSKEGGL HCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE AVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRYEG EEEECCEEECCEEEEECCCCCCEEEEECCCEEEECCCHHHHHHHHHHCCCCCEEEEEECC PKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQ CCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE DGDKVLIDIPNRSINLLISDEELAARRVEQDKKGWKPVEQRPRKVTTALKAYALLATSAD CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC KGAVRNKAMLDGL CCHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA