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The map label for this gene is rhaS [H]

Identifier: 77460918

GI number: 77460918

Start: 5299086

End: 5300081

Strand: Direct

Name: rhaS [H]

Synonym: Pfl01_4697

Alternate gene names: 77460918

Gene position: 5299086-5300081 (Clockwise)

Preceding gene: 77460916

Following gene: 77460922

Centisome position: 82.3

GC content: 61.45

Gene sequence:

>996_bases
ATGTCCAAGCAAGTCTCCACGCCCTTGCGGCGCGTCAGCATCCTGGCGATCGACCGGGTTTTCGCTTCCACCCTCATGCA
AGCCAAGGATTTCTTCCATCTGGCCAGCCTGCGTTACGGCAAACAACTGGGCCACGGCCTGACTCCGGCGTTCGAAACCC
GCCTGGTCAGCCCCGACGGCAAACCGGTCAACAGCTTCAGTGACGTGGTCATGCCGGTGGACGGCGGCCTGGAAAACGCC
GACGTCATCATCCTCCCGGCGTTCTGGGACGATTTCGATACGCTGTGCCACCGTTACCCACAGATCCTGCCGTGGCTGCG
CGAACAGCATGCCCGGGGCGCGGTGCTCTGCGGCGAGGCCACCGGGGTGTTCTGGCTGGCCGAGGCCGGGTTGCTCAACG
GCAAGGAAGCGACCACCTACTGGCGTTTCTTCAACGCCTTCGCCGAGCGTTTCCCGCAGGTCTATCTCAATCAGGACAAG
CACCTGACCGACGCCGACAACCTGTACTGCGCCGGCGGTACGACCTCAGCCTGCGATCTCTACATTTATCTGATCGAGCG
CTTCTGCGGCGCCAATGTGGCTCAGGCTGTGGCCCGCGACATTCTCTATGAAGTCCAACGCAGCTATGCACCGGGTCGCA
TTGGTTTCGGTGGCCAGAAACTGCATCAGGACGTGATCATCCTGCAGATCCAGCACTGGCTCGAAGAGCATTTCGCCGAC
AAGTTCCGCTTCGAAGACGTGGCCCGCGAGCACGGCATGAGCATCCGTAACTTCATGCGCCGCTTCCAGACCGCCACCGG
TGACAAGCCACTGCACTACCTGCAACGGCTGCGCATCGAGACTGCCAAGGGCTTGCTCTCCGGCAGTCGCAAGAGCATCA
AGACCATCAGCTACGAAGTCGGCTACGACGATGCGAGTTTCTTCGCACGGCTGTTCCGCCAGCACACCGAACTGTCGCCG
AACCAGTACCGGCAGCAGTTCCAGCAAGCTGCCTGA

Upstream 100 bases:

>100_bases
AGCCTCGCTTCCGATACAGGACACTGGACACATCCGACAAAAAATAAGACGATCCAGCCGTCTGGTGACCACTTTCCCTT
ATAAAAACAAAAGTTGAATT

Downstream 100 bases:

>100_bases
CGATTCGACCAGACACAAAAAAGGGCCTGCATCTGCAGGCCCTTTTTGTTTGCCGAATCCGCTTAAGGCTTGTGCGCCCG
GGACAGGAATTCGTGCGATT

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSKQVSTPLRRVSILAIDRVFASTLMQAKDFFHLASLRYGKQLGHGLTPAFETRLVSPDGKPVNSFSDVVMPVDGGLENA
DVIILPAFWDDFDTLCHRYPQILPWLREQHARGAVLCGEATGVFWLAEAGLLNGKEATTYWRFFNAFAERFPQVYLNQDK
HLTDADNLYCAGGTTSACDLYIYLIERFCGANVAQAVARDILYEVQRSYAPGRIGFGGQKLHQDVIILQIQHWLEEHFAD
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGSRKSIKTISYEVGYDDASFFARLFRQHTELSP
NQYRQQFQQAA

Sequences:

>Translated_331_residues
MSKQVSTPLRRVSILAIDRVFASTLMQAKDFFHLASLRYGKQLGHGLTPAFETRLVSPDGKPVNSFSDVVMPVDGGLENA
DVIILPAFWDDFDTLCHRYPQILPWLREQHARGAVLCGEATGVFWLAEAGLLNGKEATTYWRFFNAFAERFPQVYLNQDK
HLTDADNLYCAGGTTSACDLYIYLIERFCGANVAQAVARDILYEVQRSYAPGRIGFGGQKLHQDVIILQIQHWLEEHFAD
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGSRKSIKTISYEVGYDDASFFARLFRQHTELSP
NQYRQQFQQAA
>Mature_330_residues
SKQVSTPLRRVSILAIDRVFASTLMQAKDFFHLASLRYGKQLGHGLTPAFETRLVSPDGKPVNSFSDVVMPVDGGLENAD
VIILPAFWDDFDTLCHRYPQILPWLREQHARGAVLCGEATGVFWLAEAGLLNGKEATTYWRFFNAFAERFPQVYLNQDKH
LTDADNLYCAGGTTSACDLYIYLIERFCGANVAQAVARDILYEVQRSYAPGRIGFGGQKLHQDVIILQIQHWLEEHFADK
FRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGSRKSIKTISYEVGYDDASFFARLFRQHTELSPN
QYRQQFQQAA

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=93, Percent_Identity=39.7849462365591, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787987, Length=110, Percent_Identity=29.0909090909091, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790391, Length=98, Percent_Identity=33.6734693877551, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37772; Mature: 37641

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQVSTPLRRVSILAIDRVFASTLMQAKDFFHLASLRYGKQLGHGLTPAFETRLVSPDG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCC
KPVNSFSDVVMPVDGGLENADVIILPAFWDDFDTLCHRYPQILPWLREQHARGAVLCGEA
CCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
TGVFWLAEAGLLNGKEATTYWRFFNAFAERFPQVYLNQDKHLTDADNLYCAGGTTSACDL
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEECCCCCHHHHH
YIYLIERFCGANVAQAVARDILYEVQRSYAPGRIGFGGQKLHQDVIILQIQHWLEEHFAD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGSRKSIKTISYEV
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEC
GYDDASFFARLFRQHTELSPNQYRQQFQQAA
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKQVSTPLRRVSILAIDRVFASTLMQAKDFFHLASLRYGKQLGHGLTPAFETRLVSPDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCC
KPVNSFSDVVMPVDGGLENADVIILPAFWDDFDTLCHRYPQILPWLREQHARGAVLCGEA
CCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
TGVFWLAEAGLLNGKEATTYWRFFNAFAERFPQVYLNQDKHLTDADNLYCAGGTTSACDL
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEECCCCCHHHHH
YIYLIERFCGANVAQAVARDILYEVQRSYAPGRIGFGGQKLHQDVIILQIQHWLEEHFAD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGSRKSIKTISYEV
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEC
GYDDASFFARLFRQHTELSPNQYRQQFQQAA
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA