| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is puuP [H]
Identifier: 77460777
GI number: 77460777
Start: 5139458
End: 5140783
Strand: Reverse
Name: puuP [H]
Synonym: Pfl01_4556
Alternate gene names: 77460777
Gene position: 5140783-5139458 (Counterclockwise)
Preceding gene: 77460778
Following gene: 77460771
Centisome position: 79.85
GC content: 61.69
Gene sequence:
>1326_bases ATGGCTCGTTTGCAACGCACCCTTTCACTAGGGTCGGTGGTGCTGTTCGGCATCGCCTACATGACGCCGATCATTGTCCT CGGCACGTTCGGCATCCTCGCCCAGTCCACCGCCGGCATGGTGCCCGCCGCGTATCTGGCGGCGCTGGTGGCGATGTTTT TCACCGCCATGAGCTACGGTCGCATGGCCGCTGCGTTTCCGGTGGCCGGCTCGGCCTACAGCTACGTGCGCAAGGCCATC AGCCCGAAACTCGGCTTCATCGCCGGTTGGGCGGTGCTGCTCGATTATCTGTTTCTGCCGATGGCGATCTGGCTGATCGG CGCCGCGTACCTCGCGTCGGCCTTCCCGTCGATCCCGCAGTGGATCTGGGTGCTGGCGTTCATCGGCATCACCAGCGCGA TCAACATCATCGGCCTGAAGCTGGCCAACGGCATCAACGCCTTGCTGATGCTGGTGCAGTTCCTGGTGCTGATCGCCTTC GTCGGGCTGTGCGTGCATTACGTCGGCGGCGATGCCAGCCAGCCGCTGTGGTCGATCAAACCGTTCTTCAATGGCGACAT GCAAATGCCGCTGATCATGAGCGGCGCGGCCATCGCTTGCTATTCGTTCCTCGGTTTTGATGCGGTCAGCACCCTCACCG AAGAAACCCGCGATCCACGTCGCACCATCCCTCGGGCAATCATGTTGATCACCCTGATCGGCGGGCTGATTTTCGTCGGC GTCTCGTACTTCGTGCAGATCGCCCATCCTTCGTTCCAGTTCGACAGCGTCGACTCGGCGGCCTACGAGATTGCGCGCAA CATTGGCGGTGATCTGTTCGTGTCGATCTTCCTGATCGGCCTGATCGTCGGTCAGTTCGCCTCGGGTCTGTCGGCGCAGG CCAGCGGTTCGCGTTTGTTGTTCGCGATGGGCCGTGACGGTGTGCTGCCCAAGTCATTCTTCGGCACCTTGCACGAGCGC TTCGGCACGCCGGTCAACAGCATCCTGCTGTGTGCGGTGGTGGCCTTGCTGGCGCTGAAACTAGACGTGACCACCTCGAC CTCGTTCATCAACTTCGGCGCGTTTCTGGCGTTCAGTCTGGTCAACCTGTCGGTGATTTTTCACTACTGGATCGGCGGCG AGAAAAAAGGCCTGCGCGAGTTGATCCTGTTCCTGATCTTCCCGTTCATCGGCCTGGCGGCGGACTTGTGGCTGATGGTC AGCCTCGATCACCTGGCGGTGTATCTGGGCCTGAGCTGGCTGGCGATTGGCGTGGTGTACCTGGCGGTGCTTACGGGTGG CTTCCGCCGGCAGCCGCCGGAGATGGATTTCCAGGAAGCCGCCTGA
Upstream 100 bases:
>100_bases CAACACATCTGTTTGACCCAAGAACAACAACGCAACACCCGAAACATTCGCCGAACTCGGCCTCTGCCATAAATCCAATA AAATCCGGAGTAAGTCGCCC
Downstream 100 bases:
>100_bases CCCGGCATCAGGCCGCCGGGCGGGTCTGGCGTAACGGCAACTGCACGCGGAACGTCGTGCCGGCGCCCAACGTGCTGCGC ACGGAAATATCGCCGCCGTG
Product: amino acid permease-associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MARLQRTLSLGSVVLFGIAYMTPIIVLGTFGILAQSTAGMVPAAYLAALVAMFFTAMSYGRMAAAFPVAGSAYSYVRKAI SPKLGFIAGWAVLLDYLFLPMAIWLIGAAYLASAFPSIPQWIWVLAFIGITSAINIIGLKLANGINALLMLVQFLVLIAF VGLCVHYVGGDASQPLWSIKPFFNGDMQMPLIMSGAAIACYSFLGFDAVSTLTEETRDPRRTIPRAIMLITLIGGLIFVG VSYFVQIAHPSFQFDSVDSAAYEIARNIGGDLFVSIFLIGLIVGQFASGLSAQASGSRLLFAMGRDGVLPKSFFGTLHER FGTPVNSILLCAVVALLALKLDVTTSTSFINFGAFLAFSLVNLSVIFHYWIGGEKKGLRELILFLIFPFIGLAADLWLMV SLDHLAVYLGLSWLAIGVVYLAVLTGGFRRQPPEMDFQEAA
Sequences:
>Translated_441_residues MARLQRTLSLGSVVLFGIAYMTPIIVLGTFGILAQSTAGMVPAAYLAALVAMFFTAMSYGRMAAAFPVAGSAYSYVRKAI SPKLGFIAGWAVLLDYLFLPMAIWLIGAAYLASAFPSIPQWIWVLAFIGITSAINIIGLKLANGINALLMLVQFLVLIAF VGLCVHYVGGDASQPLWSIKPFFNGDMQMPLIMSGAAIACYSFLGFDAVSTLTEETRDPRRTIPRAIMLITLIGGLIFVG VSYFVQIAHPSFQFDSVDSAAYEIARNIGGDLFVSIFLIGLIVGQFASGLSAQASGSRLLFAMGRDGVLPKSFFGTLHER FGTPVNSILLCAVVALLALKLDVTTSTSFINFGAFLAFSLVNLSVIFHYWIGGEKKGLRELILFLIFPFIGLAADLWLMV SLDHLAVYLGLSWLAIGVVYLAVLTGGFRRQPPEMDFQEAA >Mature_440_residues ARLQRTLSLGSVVLFGIAYMTPIIVLGTFGILAQSTAGMVPAAYLAALVAMFFTAMSYGRMAAAFPVAGSAYSYVRKAIS PKLGFIAGWAVLLDYLFLPMAIWLIGAAYLASAFPSIPQWIWVLAFIGITSAINIIGLKLANGINALLMLVQFLVLIAFV GLCVHYVGGDASQPLWSIKPFFNGDMQMPLIMSGAAIACYSFLGFDAVSTLTEETRDPRRTIPRAIMLITLIGGLIFVGV SYFVQIAHPSFQFDSVDSAAYEIARNIGGDLFVSIFLIGLIVGQFASGLSAQASGSRLLFAMGRDGVLPKSFFGTLHERF GTPVNSILLCAVVALLALKLDVTTSTSFINFGAFLAFSLVNLSVIFHYWIGGEKKGLRELILFLIFPFIGLAADLWLMVS LDHLAVYLGLSWLAIGVVYLAVLTGGFRRQPPEMDFQEAA
Specific function: Imports putrescine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
Organism=Homo sapiens, GI4507047, Length=409, Percent_Identity=26.4058679706601, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI258645169, Length=425, Percent_Identity=24.7058823529412, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI258614005, Length=418, Percent_Identity=23.6842105263158, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI258614003, Length=425, Percent_Identity=24, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI110347453, Length=392, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI181337167, Length=369, Percent_Identity=25.7452574525745, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI114326544, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI114326550, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI186910308, Length=350, Percent_Identity=26.2857142857143, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI186910306, Length=350, Percent_Identity=26.2857142857143, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI186910304, Length=350, Percent_Identity=26.2857142857143, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI87081869, Length=434, Percent_Identity=43.778801843318, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI87082023, Length=437, Percent_Identity=42.3340961098398, Blast_Score=344, Evalue=8e-96, Organism=Escherichia coli, GI1786789, Length=308, Percent_Identity=27.2727272727273, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786602, Length=292, Percent_Identity=25, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786302, Length=324, Percent_Identity=24.0740740740741, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788480, Length=326, Percent_Identity=25.1533742331288, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87081708, Length=393, Percent_Identity=23.4096692111959, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI87081915, Length=303, Percent_Identity=23.7623762376238, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1790653, Length=278, Percent_Identity=23.3812949640288, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17533459, Length=401, Percent_Identity=27.1820448877805, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17532491, Length=396, Percent_Identity=26.2626262626263, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17531343, Length=397, Percent_Identity=23.4256926952141, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI221512776, Length=411, Percent_Identity=23.6009732360097, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24666159, Length=411, Percent_Identity=23.6009732360097, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI281366235, Length=411, Percent_Identity=26.0340632603406, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI116007820, Length=411, Percent_Identity=26.0340632603406, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI24667468, Length=388, Percent_Identity=25.7731958762887, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24668806, Length=404, Percent_Identity=25.4950495049505, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI21356285, Length=404, Percent_Identity=25.4950495049505, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24668802, Length=404, Percent_Identity=25.4950495049505, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI116007818, Length=411, Percent_Identity=25.7907542579075, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI85725152, Length=411, Percent_Identity=25.7907542579075, Blast_Score=82, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 47533; Mature: 47402
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLQRTLSLGSVVLFGIAYMTPIIVLGTFGILAQSTAGMVPAAYLAALVAMFFTAMSYG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC RMAAAFPVAGSAYSYVRKAISPKLGFIAGWAVLLDYLFLPMAIWLIGAAYLASAFPSIPQ CHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH WIWVLAFIGITSAINIIGLKLANGINALLMLVQFLVLIAFVGLCVHYVGGDASQPLWSIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC PFFNGDMQMPLIMSGAAIACYSFLGFDAVSTLTEETRDPRRTIPRAIMLITLIGGLIFVG CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH VSYFVQIAHPSFQFDSVDSAAYEIARNIGGDLFVSIFLIGLIVGQFASGLSAQASGSRLL HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE FAMGRDGVLPKSFFGTLHERFGTPVNSILLCAVVALLALKLDVTTSTSFINFGAFLAFSL EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VNLSVIFHYWIGGEKKGLRELILFLIFPFIGLAADLWLMVSLDHLAVYLGLSWLAIGVVY HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAVLTGGFRRQPPEMDFQEAA HHHHHCCCCCCCCCCCHHCCC >Mature Secondary Structure ARLQRTLSLGSVVLFGIAYMTPIIVLGTFGILAQSTAGMVPAAYLAALVAMFFTAMSYG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC RMAAAFPVAGSAYSYVRKAISPKLGFIAGWAVLLDYLFLPMAIWLIGAAYLASAFPSIPQ CHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH WIWVLAFIGITSAINIIGLKLANGINALLMLVQFLVLIAFVGLCVHYVGGDASQPLWSIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC PFFNGDMQMPLIMSGAAIACYSFLGFDAVSTLTEETRDPRRTIPRAIMLITLIGGLIFVG CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH VSYFVQIAHPSFQFDSVDSAAYEIARNIGGDLFVSIFLIGLIVGQFASGLSAQASGSRLL HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE FAMGRDGVLPKSFFGTLHERFGTPVNSILLCAVVALLALKLDVTTSTSFINFGAFLAFSL EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VNLSVIFHYWIGGEKKGLRELILFLIFPFIGLAADLWLMVSLDHLAVYLGLSWLAIGVVY HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAVLTGGFRRQPPEMDFQEAA HHHHHCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]