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The map label for this gene is yqhC [H]

Identifier: 77460686

GI number: 77460686

Start: 5035899

End: 5036828

Strand: Direct

Name: yqhC [H]

Synonym: Pfl01_4465

Alternate gene names: 77460686

Gene position: 5035899-5036828 (Clockwise)

Preceding gene: 77460683

Following gene: 77460693

Centisome position: 78.22

GC content: 61.94

Gene sequence:

>930_bases
ATGACGTCATTCGATCGTTTTCAGGGGCCCCCCGATGCCGACATGGAAAAGCAGCGCGCGGAACTGGCGGCCATCATTCG
CCGCAACACGTCCGAAGATGGCAGTTATGCCACTGCCGTCGGCTCGCTGTTCATGTCGCGCCACACCCAGTCCCATGATT
TCGCCCCGGTGCTCGCGCAACCGGCGCTGTGCATCATGGCCCAGGGTCGCAAAGAGGTACGGCTGGCGGACGAATTCTTC
AATTACGATCCGCTGAATTACCTGGTGGTGTCGGTTTCGATGCCGTTGAGCGGTCGGGTGGTGAATGTCTCGCCCGAAGA
GCCGATCCTCGCCGTACGCCTGGACATTGATCCTGCGGAAATCACCGCGCTGATCGCCGACGCCGGCCCGATGGGCGTAC
CGACCCGGCCGACCGGACGTGGTCTGTATGTCGAGAAAATCGACAGTGCGATGCTCGATGCGGTGCTGCGTCTGGCCCGC
CTGCTCGACGCACCGAAAGACATCGCCATGCTTGCGCCGCTGATCCGTCGGGAGATTCTCTATCGTCTGCTGCGCAGTCC
TCAGGGCCATCGGCTGTACGAAATCGCCATCGCCAACAGCCAGAGCCACCGCATCAGCCAGGCAATCAAATGGCTCAACG
GCAACTTCGAGCAACCGCTGCGTATTGATGACCTGGCGAAGGAAGTGAACCTCAGCGTCTCGACCTTGCATCACCGCTTC
AAGGCGATGACGGCGATGAGCCCGTTGCAGTATCAGAAGCAGCTGCGCCTGCAAGAGGCGCGGCGGTTGATGCTGGCTGA
GGGGCTGGAGGCTTCGGCGGCGGGGTATCGGGTGGGGTATGAAAGTCCGTCGCAGTTCAGTCGCGAGTACAGCCGGTTGT
TTGGCGCGCCGCCGTTGCGGGATCTGGCGCGCCTGCGATTGAGTGTCTGA

Upstream 100 bases:

>100_bases
ATGCAGGATCAGGCAAGCATTTGACAGGATGTGTCTACCGCTCGCGCTTGCACAAACTTATGCTCTGCTCCCATTCCATC
CCTTGCCGAGGAGGCTGTGC

Downstream 100 bases:

>100_bases
TCAGGCGCCGAGTACCCGACACGCCTCACTCGGCAATGTCACCGACACCGGATGCCCGATCCCCAGCCCGAAGCCCTGAC
ACGGCGTGCTCAGCGCCGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTSFDRFQGPPDADMEKQRAELAAIIRRNTSEDGSYATAVGSLFMSRHTQSHDFAPVLAQPALCIMAQGRKEVRLADEFF
NYDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAEITALIADAGPMGVPTRPTGRGLYVEKIDSAMLDAVLRLAR
LLDAPKDIAMLAPLIRREILYRLLRSPQGHRLYEIAIANSQSHRISQAIKWLNGNFEQPLRIDDLAKEVNLSVSTLHHRF
KAMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLRDLARLRLSV

Sequences:

>Translated_309_residues
MTSFDRFQGPPDADMEKQRAELAAIIRRNTSEDGSYATAVGSLFMSRHTQSHDFAPVLAQPALCIMAQGRKEVRLADEFF
NYDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAEITALIADAGPMGVPTRPTGRGLYVEKIDSAMLDAVLRLAR
LLDAPKDIAMLAPLIRREILYRLLRSPQGHRLYEIAIANSQSHRISQAIKWLNGNFEQPLRIDDLAKEVNLSVSTLHHRF
KAMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLRDLARLRLSV
>Mature_308_residues
TSFDRFQGPPDADMEKQRAELAAIIRRNTSEDGSYATAVGSLFMSRHTQSHDFAPVLAQPALCIMAQGRKEVRLADEFFN
YDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAEITALIADAGPMGVPTRPTGRGLYVEKIDSAMLDAVLRLARL
LDAPKDIAMLAPLIRREILYRLLRSPQGHRLYEIAIANSQSHRISQAIKWLNGNFEQPLRIDDLAKEVNLSVSTLHHRFK
AMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLRDLARLRLSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=256, Percent_Identity=37.109375, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1790339, Length=161, Percent_Identity=27.3291925465839, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34570; Mature: 34439

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFDRFQGPPDADMEKQRAELAAIIRRNTSEDGSYATAVGSLFMSRHTQSHDFAPVLAQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHC
PALCIMAQGRKEVRLADEFFNYDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAE
CHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEECCCHHH
ITALIADAGPMGVPTRPTGRGLYVEKIDSAMLDAVLRLARLLDAPKDIAMLAPLIRREIL
HHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YRLLRSPQGHRLYEIAIANSQSHRISQAIKWLNGNFEQPLRIDDLAKEVNLSVSTLHHRF
HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHH
KAMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLR
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
DLARLRLSV
HHHHHHCCC
>Mature Secondary Structure 
TSFDRFQGPPDADMEKQRAELAAIIRRNTSEDGSYATAVGSLFMSRHTQSHDFAPVLAQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHC
PALCIMAQGRKEVRLADEFFNYDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAE
CHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEECCCHHH
ITALIADAGPMGVPTRPTGRGLYVEKIDSAMLDAVLRLARLLDAPKDIAMLAPLIRREIL
HHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YRLLRSPQGHRLYEIAIANSQSHRISQAIKWLNGNFEQPLRIDDLAKEVNLSVSTLHHRF
HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHH
KAMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLR
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
DLARLRLSV
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]