| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77460681
Identifier: 77460681
GI number: 77460681
Start: 5032741
End: 5033499
Strand: Reverse
Name: 77460681
Synonym: Pfl01_4460
Alternate gene names: NA
Gene position: 5033499-5032741 (Counterclockwise)
Preceding gene: 77460684
Following gene: 77460672
Centisome position: 78.18
GC content: 59.55
Gene sequence:
>759_bases ATGAATAAACTGCCTCAAATCACCCTGGCCTTCTGGGTCATGAAAATCTGCGCGACGACCCTGGGGGAAACCGCGGGGGA TTTGTTGTCGATGACCCTTAACGTCGGCTACGCCATCAGCTCGCTGATCCTGATCAGCGTGTTTGTCCTGACCCTGATCA CGCAATTGATGTCCAAGACCTACAAGCCGCTGCTGTACTGGATCGTGATCCTGTCGACCAGCACCGCCGGCACCACCATG TCGGACTTCATGGATCGCACGCTGGAACTGGGTTACGCCACCGGTTCCATGATTCTGATCGCGATCCTGCTGGCGATCTT CGCGGCATGGCGCCTGAGCGGCGACTCGCTCAACGTCACCAAGGTGCAGAGTTTTCGCGGCGAGATGTTCTACTGGATGG CGATTCTGTTCTCCAACACCCTGGGCACCGCGCTCGGCGATTACCTGGCGGACGACTCGGGTCTGGGCTTTGCCGGTGGC GCGCTGTTGATCGGCTCGGCGATTGGCGTAGTCGTGCTGCTCAAGTACTTCACGAAGATTTCGACGGTGGCGCTGTTCTG GGTGGCGTTCGTGCTGACCCGGCCGTTTGGCGCGACCCTGGGCGACTTGATGACCAAGTCCCATGAGAAGGGCGGTCTGG ACTTCGGCACCATCGGTTCGTCGGCGGTACTGGCGGGGATTCTGCTGGTGATGATCGTGGGCGCGTCTTATGCGCAGAAG CGCTATGGCAGCAAACAGGGCGTTGCCGAATTGTCCTGA
Upstream 100 bases:
>100_bases TTTTCATGGATTCCCGACCGGTTTTTCACCCGCGCAACGCCAGTCTGCCCTCGGCCATAAAGCCAAAAACCGGCCGTCAC ACACTGGAGCGTTGCCCGCG
Downstream 100 bases:
>100_bases TCGGGAAATCGGACAGGAAAGAAAACGCGCGAAGGTCTTGCACCTTCGCGCGTTTTTTTGTGATCAGTCAGTGACGATCC GAGAATGTTTCTGCGTGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MNKLPQITLAFWVMKICATTLGETAGDLLSMTLNVGYAISSLILISVFVLTLITQLMSKTYKPLLYWIVILSTSTAGTTM SDFMDRTLELGYATGSMILIAILLAIFAAWRLSGDSLNVTKVQSFRGEMFYWMAILFSNTLGTALGDYLADDSGLGFAGG ALLIGSAIGVVVLLKYFTKISTVALFWVAFVLTRPFGATLGDLMTKSHEKGGLDFGTIGSSAVLAGILLVMIVGASYAQK RYGSKQGVAELS
Sequences:
>Translated_252_residues MNKLPQITLAFWVMKICATTLGETAGDLLSMTLNVGYAISSLILISVFVLTLITQLMSKTYKPLLYWIVILSTSTAGTTM SDFMDRTLELGYATGSMILIAILLAIFAAWRLSGDSLNVTKVQSFRGEMFYWMAILFSNTLGTALGDYLADDSGLGFAGG ALLIGSAIGVVVLLKYFTKISTVALFWVAFVLTRPFGATLGDLMTKSHEKGGLDFGTIGSSAVLAGILLVMIVGASYAQK RYGSKQGVAELS >Mature_252_residues MNKLPQITLAFWVMKICATTLGETAGDLLSMTLNVGYAISSLILISVFVLTLITQLMSKTYKPLLYWIVILSTSTAGTTM SDFMDRTLELGYATGSMILIAILLAIFAAWRLSGDSLNVTKVQSFRGEMFYWMAILFSNTLGTALGDYLADDSGLGFAGG ALLIGSAIGVVVLLKYFTKISTVALFWVAFVLTRPFGATLGDLMTKSHEKGGLDFGTIGSSAVLAGILLVMIVGASYAQK RYGSKQGVAELS
Specific function: Unknown
COG id: COG4705
COG function: function code S; Uncharacterized membrane-anchored protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26954; Mature: 26954
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLPQITLAFWVMKICATTLGETAGDLLSMTLNVGYAISSLILISVFVLTLITQLMSKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKPLLYWIVILSTSTAGTTMSDFMDRTLELGYATGSMILIAILLAIFAAWRLSGDSLNVT HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHH KVQSFRGEMFYWMAILFSNTLGTALGDYLADDSGLGFAGGALLIGSAIGVVVLLKYFTKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH STVALFWVAFVLTRPFGATLGDLMTKSHEKGGLDFGTIGSSAVLAGILLVMIVGASYAQK HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH RYGSKQGVAELS HCCCCCCCCCCC >Mature Secondary Structure MNKLPQITLAFWVMKICATTLGETAGDLLSMTLNVGYAISSLILISVFVLTLITQLMSKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKPLLYWIVILSTSTAGTTMSDFMDRTLELGYATGSMILIAILLAIFAAWRLSGDSLNVT HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHH KVQSFRGEMFYWMAILFSNTLGTALGDYLADDSGLGFAGGALLIGSAIGVVVLLKYFTKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH STVALFWVAFVLTRPFGATLGDLMTKSHEKGGLDFGTIGSSAVLAGILLVMIVGASYAQK HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH RYGSKQGVAELS HCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA