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The map label for this gene is ydaM [H]

Identifier: 77460672

GI number: 77460672

Start: 5011906

End: 5013012

Strand: Reverse

Name: ydaM [H]

Synonym: Pfl01_4451

Alternate gene names: 77460672

Gene position: 5013012-5011906 (Counterclockwise)

Preceding gene: 77460681

Following gene: 77460671

Centisome position: 77.86

GC content: 61.61

Gene sequence:

>1107_bases
TTGACCCATAACGCCATTCAACGTCTTTTGCTCAAACGCTTCGCCCTCGCTGCAGCCACCTATGGATTGGCTTTGCTGCT
GCTGTGGCTGGCGTATTTCACCGGACATTACGAAGATTCGCTGGCGGGTGTCGCCGTCGGCAGCGCCCTGGTGGTCATCA
GCCAGGCAATCCTGTTCGCGGTGTTTTTCTCAGGCTGCAATCTGCGCTTTTCCGACCCGAGCCTGACCGAAGCACAAGTG
CTGCTCGGCCTTGGTTGGCAGACGTGGCTGATCGCGCATCTGGAAGAAGCGCGGGGCGAGTTCCTGGTCTTCTATGTCCT
GATCCTGCTGTTCGGCCTGTTCCATCTGTCACAGCGGGCGTTCGTACGCTGCGCAATGCTGGTGTTCTTCAGTTTTTGCG
CCATCACGCTGTGGGACGGTTACCACTTGCATCTGCACGATCCGGCGCTTTCCGCGTTGCAGGCTTGCATCCTGTTGATC
GTGCTGGCGTGGCTGGTGATTTATGCGCGCTTCGTCCAGACCTCGCGCCAACGCATGCGTCAGCGCCGGTTCGCCTTGCA
GGCGCATCAGGACACCCTGCGCGGGATGATGCGCCAGCTCGAAGACCTGGTGGCCACCGACGAACTGACCGGGCTGTTCA
ACCGCCGGCATTTCCTGCGCCTGGCCACCCGCGAGCTGAATGCGATGGAGCCCGAGGTGGTGCATGGTCTGGCGCTGATC
GACCTCGACCACTTCAAACGCATCAACGATATTCACGGCCACGCCGCTGGCGATCAGGTGTTGCAGGCTTTCGCCGGCGT
GGCCGGGGCCTGTCTGCGCGACGGCGATGTGCTGGCGCGATATGGTGGTGAGGAATTCGTGGTGCTGCTGCCCGATTGCA
ACGCCGAGCGCCTGACCGCCTGTTGCGAACGGCTGCGCATCGCCTTCACCGACGTTGAACTGGTGGGCCTGAATGTGAAA
AACCTGAGCCTGTCCGCCGGCATGACCCTGCTGGAACTGGGCGATGATCTGGACGATGCCTTGCAACGTGCCGATCAGGC
GCTCTATCGGGCCAAGCGTGACGGACGCAATCGTTGCGCGGCGGCATGGGAGAACGTCGATGCCTGA

Upstream 100 bases:

>100_bases
CCGAAAATCAATGGTCATTTATCGCCTGCGCCACTAAAGTGGCAGCCGGTCTGTAGAGTAGGACACTCGGTCAGCCTCTT
ATCGCACGGTGAGTCAACGA

Downstream 100 bases:

>100_bases
ACTGCGGGTCGGTGATCGACAGTGGTCGGTGGCGACGGGCAGCAACCTGCTCGATGCCCTCAACCGGAACGGTGTGGCGG
TGCCTTACAGCTGCCGCGCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTHNAIQRLLLKRFALAAATYGLALLLLWLAYFTGHYEDSLAGVAVGSALVVISQAILFAVFFSGCNLRFSDPSLTEAQV
LLGLGWQTWLIAHLEEARGEFLVFYVLILLFGLFHLSQRAFVRCAMLVFFSFCAITLWDGYHLHLHDPALSALQACILLI
VLAWLVIYARFVQTSRQRMRQRRFALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFLRLATRELNAMEPEVVHGLALI
DLDHFKRINDIHGHAAGDQVLQAFAGVAGACLRDGDVLARYGGEEFVVLLPDCNAERLTACCERLRIAFTDVELVGLNVK
NLSLSAGMTLLELGDDLDDALQRADQALYRAKRDGRNRCAAAWENVDA

Sequences:

>Translated_368_residues
MTHNAIQRLLLKRFALAAATYGLALLLLWLAYFTGHYEDSLAGVAVGSALVVISQAILFAVFFSGCNLRFSDPSLTEAQV
LLGLGWQTWLIAHLEEARGEFLVFYVLILLFGLFHLSQRAFVRCAMLVFFSFCAITLWDGYHLHLHDPALSALQACILLI
VLAWLVIYARFVQTSRQRMRQRRFALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFLRLATRELNAMEPEVVHGLALI
DLDHFKRINDIHGHAAGDQVLQAFAGVAGACLRDGDVLARYGGEEFVVLLPDCNAERLTACCERLRIAFTDVELVGLNVK
NLSLSAGMTLLELGDDLDDALQRADQALYRAKRDGRNRCAAAWENVDA
>Mature_367_residues
THNAIQRLLLKRFALAAATYGLALLLLWLAYFTGHYEDSLAGVAVGSALVVISQAILFAVFFSGCNLRFSDPSLTEAQVL
LGLGWQTWLIAHLEEARGEFLVFYVLILLFGLFHLSQRAFVRCAMLVFFSFCAITLWDGYHLHLHDPALSALQACILLIV
LAWLVIYARFVQTSRQRMRQRRFALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFLRLATRELNAMEPEVVHGLALID
LDHFKRINDIHGHAAGDQVLQAFAGVAGACLRDGDVLARYGGEEFVVLLPDCNAERLTACCERLRIAFTDVELVGLNVKN
LSLSAGMTLLELGDDLDDALQRADQALYRAKRDGRNRCAAAWENVDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=40.1162790697674, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=36.046511627907, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=39.5348837209302, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=35.8490566037736, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=38.8888888888889, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=36.5384615384615, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=36.9047619047619, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=32.9608938547486, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=155, Percent_Identity=36.1290322580645, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 41203; Mature: 41072

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHNAIQRLLLKRFALAAATYGLALLLLWLAYFTGHYEDSLAGVAVGSALVVISQAILFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VFFSGCNLRFSDPSLTEAQVLLGLGWQTWLIAHLEEARGEFLVFYVLILLFGLFHLSQRA
HHHHCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FVRCAMLVFFSFCAITLWDGYHLHLHDPALSALQACILLIVLAWLVIYARFVQTSRQRMR
HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRRFALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFLRLATRELNAMEPEVVHGLALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
DLDHFKRINDIHGHAAGDQVLQAFAGVAGACLRDGDVLARYGGEEFVVLLPDCNAERLTA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCHHHHHH
CCERLRIAFTDVELVGLNVKNLSLSAGMTLLELGDDLDDALQRADQALYRAKRDGRNRCA
HHHHHHHHHCCEEEEECCCCCCCHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
AAWENVDA
HHHCCCCC
>Mature Secondary Structure 
THNAIQRLLLKRFALAAATYGLALLLLWLAYFTGHYEDSLAGVAVGSALVVISQAILFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VFFSGCNLRFSDPSLTEAQVLLGLGWQTWLIAHLEEARGEFLVFYVLILLFGLFHLSQRA
HHHHCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FVRCAMLVFFSFCAITLWDGYHLHLHDPALSALQACILLIVLAWLVIYARFVQTSRQRMR
HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRRFALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFLRLATRELNAMEPEVVHGLALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
DLDHFKRINDIHGHAAGDQVLQAFAGVAGACLRDGDVLARYGGEEFVVLLPDCNAERLTA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCHHHHHH
CCERLRIAFTDVELVGLNVKNLSLSAGMTLLELGDDLDDALQRADQALYRAKRDGRNRCA
HHHHHHHHHCCEEEEECCCCCCCHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
AAWENVDA
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]