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The map label for this gene is soxR [H]

Identifier: 77460141

GI number: 77460141

Start: 4436873

End: 4437331

Strand: Direct

Name: soxR [H]

Synonym: Pfl01_3920

Alternate gene names: 77460141

Gene position: 4436873-4437331 (Clockwise)

Preceding gene: 77460139

Following gene: 77460142

Centisome position: 68.91

GC content: 63.83

Gene sequence:

>459_bases
ATGATCACTGCGCAAAATGTGCACAAGCAACTGACCGTCGGCGAAGTCGCGGCCCGCAGCGGCGTGGCAGTCACCGCCCT
GCACTTTTATGAATCCAAGGGGTTGATCAAGAGCCAGCGCAATGCCGGCAACCAACGGCGCTATCCACGGGAAGTGCTGC
GGCGGGTGGCGTTGATCAAGGTGGCGCAACGCCTGGGCATTTCACTGGCGGAAATCGGCGAGGCGTTGAAACAGCTACCG
GACAACCGCGCCCCCACCGCGGCGGACTGGAAAGTGTTGTCGGAGCAGTGGCGGCGGGAGCTGGACGAGCGGATCAATCA
GTTGATGCTGCTGCGGGACCGGCTGACCGGTTGCATCGGTTGCGGATGCCTGTCGATGGAGGCCTGCCCGCTGCGCAATC
AGGGCGATGTGCTGGGCGAGCGAGGGCCGGGAGCGCACTTTCTCGACGTTCCCGACTGA

Upstream 100 bases:

>100_bases
GTGCTTGCATGACATCCCCACTCTGTCAGGCGAATCTTGCGATTCGAAGGCCTGCAGGGTAAAACCTCGAGTTAACTAGA
GGTAAAGGGGCAATTTGCAA

Downstream 100 bases:

>100_bases
GGACTCGCTCCGCTCCGGCATCGCGAGGGCTGCTCGTCGGCTGCTAGGTCATGGCGGCGGCACAGATCTATAGTTGAGCG
ACCGGCAACCCCGGCGAAGG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MITAQNVHKQLTVGEVAARSGVAVTALHFYESKGLIKSQRNAGNQRRYPREVLRRVALIKVAQRLGISLAEIGEALKQLP
DNRAPTAADWKVLSEQWRRELDERINQLMLLRDRLTGCIGCGCLSMEACPLRNQGDVLGERGPGAHFLDVPD

Sequences:

>Translated_152_residues
MITAQNVHKQLTVGEVAARSGVAVTALHFYESKGLIKSQRNAGNQRRYPREVLRRVALIKVAQRLGISLAEIGEALKQLP
DNRAPTAADWKVLSEQWRRELDERINQLMLLRDRLTGCIGCGCLSMEACPLRNQGDVLGERGPGAHFLDVPD
>Mature_152_residues
MITAQNVHKQLTVGEVAARSGVAVTALHFYESKGLIKSQRNAGNQRRYPREVLRRVALIKVAQRLGISLAEIGEALKQLP
DNRAPTAADWKVLSEQWRRELDERINQLMLLRDRLTGCIGCGCLSMEACPLRNQGDVLGERGPGAHFLDVPD

Specific function: Activates the transcription of the soxS gene which itself controls the superoxide response regulon. SoxR contains a 2Fe-2S iron-sulfur cluster that may act as a redox sensor system that recognizes superoxide. The variable redox state of the Fe-S cluster i

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790498, Length=139, Percent_Identity=67.6258992805755, Blast_Score=189, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR010211
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 16883; Mature: 16883

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITAQNVHKQLTVGEVAARSGVAVTALHFYESKGLIKSQRNAGNQRRYPREVLRRVALIK
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHH
VAQRLGISLAEIGEALKQLPDNRAPTAADWKVLSEQWRRELDERINQLMLLRDRLTGCIG
HHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGCLSMEACPLRNQGDVLGERGPGAHFLDVPD
HCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MITAQNVHKQLTVGEVAARSGVAVTALHFYESKGLIKSQRNAGNQRRYPREVLRRVALIK
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHH
VAQRLGISLAEIGEALKQLPDNRAPTAADWKVLSEQWRRELDERINQLMLLRDRLTGCIG
HHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGCLSMEACPLRNQGDVLGERGPGAHFLDVPD
HCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045804; 10984043 [H]