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The map label for this gene is yodB [H]

Identifier: 77459570

GI number: 77459570

Start: 3823109

End: 3823660

Strand: Reverse

Name: yodB [H]

Synonym: Pfl01_3348

Alternate gene names: 77459570

Gene position: 3823660-3823109 (Counterclockwise)

Preceding gene: 77459578

Following gene: 77459568

Centisome position: 59.39

GC content: 62.86

Gene sequence:

>552_bases
ATGACCCGCGACATGGCCGCACCCCGTTATGGAAAACTGTCGATCACCTTGCACTGGCTGATGCTGGCGCTGTTCGTCGG
CGTGTATGCCTGCGTTGAAATCAAAGGCTTCATGCCCCGAGGCAGCGAAGCGCGAGGCCTGTTAATGGGATTGCACGGGA
TGTTCGGCGCGAGCATTTTCGTCCTGGTGTGGGTGCGCCTGTTTGGCCGCCTGACGCCGCGTCCGCCGATCACCCCGAAA
CCGCCTGCCTGGCAGACGGCAATCGCGCACCTGATGCACCTGGCCCTGTATGGGCTGATGATCGTCACACCGGTGCTGGC
CTGGCTGATGCTCGCGGCTGGCGACAAACCTTTTCCGTATTTCGGCTTTCATGTGCCGGCGCCGGTGGCGGTCGATCCGG
ACCTGGCCAAGCAGATCAAGCACTGGCACGAGCTGATCGGCAATGCCGGTTACTGGCTGATCGGCCTGCACGCCGCTGCC
GGGCTGTTCCATCATTACTGGGTCGGCGACGACACCCTGGACCGGATGCTGGGAGGACGCACTCGTTCCTGA

Upstream 100 bases:

>100_bases
TTAAGACTTCCCCGGCAGGGTGACATCGTCGGTTCGCCCGGCAACCGGATCGAGACAGCCGAACGAGTCGGCCGTCGCTC
ACAACAATCACGAGGCACTT

Downstream 100 bases:

>100_bases
GGCGCGGGAGCCTACTCAGTCAGGCAGGTTCTCCGGCGCTACCCATACGCTGCACGGAATCTTGTACAGCAGCTGTTCTA
CCGTGCTGCCGACCAGCCGG

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTRDMAAPRYGKLSITLHWLMLALFVGVYACVEIKGFMPRGSEARGLLMGLHGMFGASIFVLVWVRLFGRLTPRPPITPK
PPAWQTAIAHLMHLALYGLMIVTPVLAWLMLAAGDKPFPYFGFHVPAPVAVDPDLAKQIKHWHELIGNAGYWLIGLHAAA
GLFHHYWVGDDTLDRMLGGRTRS

Sequences:

>Translated_183_residues
MTRDMAAPRYGKLSITLHWLMLALFVGVYACVEIKGFMPRGSEARGLLMGLHGMFGASIFVLVWVRLFGRLTPRPPITPK
PPAWQTAIAHLMHLALYGLMIVTPVLAWLMLAAGDKPFPYFGFHVPAPVAVDPDLAKQIKHWHELIGNAGYWLIGLHAAA
GLFHHYWVGDDTLDRMLGGRTRS
>Mature_182_residues
TRDMAAPRYGKLSITLHWLMLALFVGVYACVEIKGFMPRGSEARGLLMGLHGMFGASIFVLVWVRLFGRLTPRPPITPKP
PAWQTAIAHLMHLALYGLMIVTPVLAWLMLAAGDKPFPYFGFHVPAPVAVDPDLAKQIKHWHELIGNAGYWLIGLHAAAG
LFHHYWVGDDTLDRMLGGRTRS

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=177, Percent_Identity=39.5480225988701, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI87081903, Length=176, Percent_Identity=42.6136363636364, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 20366; Mature: 20234

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRDMAAPRYGKLSITLHWLMLALFVGVYACVEIKGFMPRGSEARGLLMGLHGMFGASIF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VLVWVRLFGRLTPRPPITPKPPAWQTAIAHLMHLALYGLMIVTPVLAWLMLAAGDKPFPY
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FGFHVPAPVAVDPDLAKQIKHWHELIGNAGYWLIGLHAAAGLFHHYWVGDDTLDRMLGGR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
TRS
CCC
>Mature Secondary Structure 
TRDMAAPRYGKLSITLHWLMLALFVGVYACVEIKGFMPRGSEARGLLMGLHGMFGASIF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VLVWVRLFGRLTPRPPITPKPPAWQTAIAHLMHLALYGLMIVTPVLAWLMLAAGDKPFPY
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FGFHVPAPVAVDPDLAKQIKHWHELIGNAGYWLIGLHAAAGLFHHYWVGDDTLDRMLGGR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
TRS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]