| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yxlA [H]
Identifier: 77459483
GI number: 77459483
Start: 3743042
End: 3744448
Strand: Reverse
Name: yxlA [H]
Synonym: Pfl01_3261
Alternate gene names: 77459483
Gene position: 3744448-3743042 (Counterclockwise)
Preceding gene: 77459486
Following gene: 77459482
Centisome position: 58.16
GC content: 60.63
Gene sequence:
>1407_bases ATGTCCCAGATGTCCCGGCAAGATCCGTTGATCGAGAATCACACGGTCGACTACGTCCCACTCGCGGAACGCCACGGGAA GGCCCGCGACCTTTTCACCCTTTGGTTCAGCACCAACATTGCGCCACTGCCCATCGTCACCGGCGCCATGGTGGTTCAGG TATTTCATCTCGACTTGTTCTGGGGGCTGCTGGCGATTGCGCTGGGGCACATGATCGGCGGCGTGGTGATCGCCCTGGCG TCGGCGCAAGGCCCGCGCATGGGCATTCCGCAGATGGTGCAGAGCCGGGGCCAGTTCGGGCGTTACGGCGCGCTGTTGAT CGTGTTCTTTGCGGCGATCATCTACATCGGCTTTTTCATTTCCAACATTGTGCTGGCGGGTAAATCCATCGTCGGCATTG CGCCGTCGGTGCCGGTGCCGTTGAGCATTCTGATCGGCGCTCTCAGCGCCACGGCCATTGGTGTGATCGGCTACAACTTC ATTCACACGCTGAACCGCATCGGCACCTGGGTGATGGGCAGCGCGCTGCTGGCCGGGTTCATCTACATCTTTGCCCACGA GTTGCCGGCGGACTTCCTTACCCGGGGCAGCTTCAATCTGTCCGGATGGCTGGCGACGATGTCGCTGGGGATCATCTGGC AGATCAGCTTTTCGCCGTACGTCTCCGACTATTCCCGCTACCTGCCGGCGGACATCGGCATCGGCAAGCCATTTATCGCG ACTTATCTGGGCGCCACGCTGGGCACGATTCTGTCGTTCACGTTCGGCGCGGTGGCGGTACTGGCGACGCCGGAAGGCAC TGAGGCGATGGCGGCGGTCAAGCAATCCACCGGTTGGCTCGGGCCGATTCTGATGGTGCTGTTCCTGCTCAACATCATCA GCCACAACGCGCTGAATCTGTATGGCGCGGTACTGTCGATCATTACCTCGATCCAGACCTTTGCCAGCCAATGGACGCCG AGTATCAAAGTGCGAGTGAGCTTGTCGGGCGTGGTGCTGGCGGGCTGCTGCCTGGTGGCGCTGGGCGCGTCGGCGGATTT CATTTCCGAGTTCATCGGTTTGATTCTGGCGCTGCTGCTGGTGTTGGTACCGTGGGCGTCGATCAACCTGATCGACTTCT ATCTGATCAAGCGCGGTAGCTACGACATCGCTTCGATCTTCCGCGCCGACGGCGGCATTTATGGGCGCTTCAACTTGCAC GCGATCATTGCCTACTTCATCGGCATCATCGTGCAACTGCCGTTCGCCAACACATCGTTGTATGTCGGGCCGTACGCCAA TCTGGTGGAAGGCGCGGACCTGTCATGGCTGGTCGGCCTGATCGTGACGTGCCCGCTGTATTACTGCCTCGCGACCCGTG GCCAGACTCAGCAGAGCAGGGCGGCGCGGTTGGGTTTTACCGACTGA
Upstream 100 bases:
>100_bases TGGAATACCATAATATGGTGTTCATCTGAGGGGCGGCCACGAATCTCCCCCGGTTTGGCTTCATACAACGATAAGAACAG ACCCAATCGAGTTCATTTTT
Downstream 100 bases:
>100_bases GCGTTCGCAGGCTGTTCAAACAATGCCCGGCACTTCGCCGGGCATTGTTGTTTCCGCATCCCGGCGGTCACGCAAATTGG CCATTTCGATCCCCTTTTGG
Product: cytosine/purines, uracil, thiamine, allantoin permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MSQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLDLFWGLLAIALGHMIGGVVIALA SAQGPRMGIPQMVQSRGQFGRYGALLIVFFAAIIYIGFFISNIVLAGKSIVGIAPSVPVPLSILIGALSATAIGVIGYNF IHTLNRIGTWVMGSALLAGFIYIFAHELPADFLTRGSFNLSGWLATMSLGIIWQISFSPYVSDYSRYLPADIGIGKPFIA TYLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNALNLYGAVLSIITSIQTFASQWTP SIKVRVSLSGVVLAGCCLVALGASADFISEFIGLILALLLVLVPWASINLIDFYLIKRGSYDIASIFRADGGIYGRFNLH AIIAYFIGIIVQLPFANTSLYVGPYANLVEGADLSWLVGLIVTCPLYYCLATRGQTQQSRAARLGFTD
Sequences:
>Translated_468_residues MSQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLDLFWGLLAIALGHMIGGVVIALA SAQGPRMGIPQMVQSRGQFGRYGALLIVFFAAIIYIGFFISNIVLAGKSIVGIAPSVPVPLSILIGALSATAIGVIGYNF IHTLNRIGTWVMGSALLAGFIYIFAHELPADFLTRGSFNLSGWLATMSLGIIWQISFSPYVSDYSRYLPADIGIGKPFIA TYLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNALNLYGAVLSIITSIQTFASQWTP SIKVRVSLSGVVLAGCCLVALGASADFISEFIGLILALLLVLVPWASINLIDFYLIKRGSYDIASIFRADGGIYGRFNLH AIIAYFIGIIVQLPFANTSLYVGPYANLVEGADLSWLVGLIVTCPLYYCLATRGQTQQSRAARLGFTD >Mature_467_residues SQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLDLFWGLLAIALGHMIGGVVIALAS AQGPRMGIPQMVQSRGQFGRYGALLIVFFAAIIYIGFFISNIVLAGKSIVGIAPSVPVPLSILIGALSATAIGVIGYNFI HTLNRIGTWVMGSALLAGFIYIFAHELPADFLTRGSFNLSGWLATMSLGIIWQISFSPYVSDYSRYLPADIGIGKPFIAT YLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNALNLYGAVLSIITSIQTFASQWTPS IKVRVSLSGVVLAGCCLVALGASADFISEFIGLILALLLVLVPWASINLIDFYLIKRGSYDIASIFRADGGIYGRFNLHA IIAYFIGIIVQLPFANTSLYVGPYANLVEGADLSWLVGLIVTCPLYYCLATRGQTQQSRAARLGFTD
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 50287; Mature: 50156
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLDLF CCCCCCCCCCCCCCCCCEEECHHHCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHH WGLLAIALGHMIGGVVIALASAQGPRMGIPQMVQSRGQFGRYGALLIVFFAAIIYIGFFI HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH SNIVLAGKSIVGIAPSVPVPLSILIGALSATAIGVIGYNFIHTLNRIGTWVMGSALLAGF HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYIFAHELPADFLTRGSFNLSGWLATMSLGIIWQISFSPYVSDYSRYLPADIGIGKPFIA HHHHHHHCCHHHHHCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHH TYLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNALNL HHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH YGAVLSIITSIQTFASQWTPSIKVRVSLSGVVLAGCCLVALGASADFISEFIGLILALLL HHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VLVPWASINLIDFYLIKRGSYDIASIFRADGGIYGRFNLHAIIAYFIGIIVQLPFANTSL HHHCCCCHHHHEEEEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEE YVGPYANLVEGADLSWLVGLIVTCPLYYCLATRGQTQQSRAARLGFTD EECCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC >Mature Secondary Structure SQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLDLF CCCCCCCCCCCCCCCCEEECHHHCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHH WGLLAIALGHMIGGVVIALASAQGPRMGIPQMVQSRGQFGRYGALLIVFFAAIIYIGFFI HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH SNIVLAGKSIVGIAPSVPVPLSILIGALSATAIGVIGYNFIHTLNRIGTWVMGSALLAGF HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYIFAHELPADFLTRGSFNLSGWLATMSLGIIWQISFSPYVSDYSRYLPADIGIGKPFIA HHHHHHHCCHHHHHCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHH TYLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNALNL HHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH YGAVLSIITSIQTFASQWTPSIKVRVSLSGVVLAGCCLVALGASADFISEFIGLILALLL HHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VLVPWASINLIDFYLIKRGSYDIASIFRADGGIYGRFNLHAIIAYFIGIIVQLPFANTSL HHHCCCCHHHHEEEEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEE YVGPYANLVEGADLSWLVGLIVTCPLYYCLATRGQTQQSRAARLGFTD EECCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]