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The map label for this gene is ytfH [C]

Identifier: 77459486

GI number: 77459486

Start: 3746446

End: 3746892

Strand: Reverse

Name: ytfH [C]

Synonym: Pfl01_3264

Alternate gene names: 77459486

Gene position: 3746892-3746446 (Counterclockwise)

Preceding gene: 77459493

Following gene: 77459483

Centisome position: 58.2

GC content: 59.06

Gene sequence:

>447_bases
ATGAAACGCAAAAGCCTTGCGGGCAATGCCTGCCCGATCGCCCGGACACTCGACCTGATCGGCGACTGGTGGTCGCTGCT
GATCATCCGCGACGCGCTGGAAGGCATCAGTCGTTTCAGCGATTTCGAGAAGAGCCTGGAAATCGCCAAGAACATGTTAA
GCACCCGGCTCAAAGGGCTGGTGGAGCGTGACATCCTGCGGCTGGTGCCGGCGTCCGATGGCAGCGCTTACAAGGAGTAC
GTGCTGACTGAAAAAGGCCGGGCGTTGCAAACCGTGATCGTTGCATTGTCGCAGTGGGGTGGCGAGTTCATGTTCGAGCC
GGGCGAGTCGGGTTCTGTGATGGTCGATGCGCAGAAGCGAAAGCCGATCAGGAAGCTGGAGCTGCTATCGGCCGATGGTC
GCCAGTTGGCGCCGGAAGATATCGTGACAACTTCTACTGCCTACTGA

Upstream 100 bases:

>100_bases
AGGTGCTAAGTTTCGCCAGCCGATCAGCGTAGACGCTCGCGGGCGCCAGAGTTGTAAGATGCAACCACGATTTGATGACC
GTTTTGCTGGAGAGCGCTGA

Downstream 100 bases:

>100_bases
CACCTGCGTCAGGCGAAAAAAAAGCGCCCCGACGTTCTGTTCGGGGCGCTGTGCATTCAGGGGCGCTTGGCGTATTTAAC
GAAACGCCGGCACCACATGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKRKSLAGNACPIARTLDLIGDWWSLLIIRDALEGISRFSDFEKSLEIAKNMLSTRLKGLVERDILRLVPASDGSAYKEY
VLTEKGRALQTVIVALSQWGGEFMFEPGESGSVMVDAQKRKPIRKLELLSADGRQLAPEDIVTTSTAY

Sequences:

>Translated_148_residues
MKRKSLAGNACPIARTLDLIGDWWSLLIIRDALEGISRFSDFEKSLEIAKNMLSTRLKGLVERDILRLVPASDGSAYKEY
VLTEKGRALQTVIVALSQWGGEFMFEPGESGSVMVDAQKRKPIRKLELLSADGRQLAPEDIVTTSTAY
>Mature_148_residues
MKRKSLAGNACPIARTLDLIGDWWSLLIIRDALEGISRFSDFEKSLEIAKNMLSTRLKGLVERDILRLVPASDGSAYKEY
VLTEKGRALQTVIVALSQWGGEFMFEPGESGSVMVDAQKRKPIRKLELLSADGRQLAPEDIVTTSTAY

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16431; Mature: 16431

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKSLAGNACPIARTLDLIGDWWSLLIIRDALEGISRFSDFEKSLEIAKNMLSTRLKGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VERDILRLVPASDGSAYKEYVLTEKGRALQTVIVALSQWGGEFMFEPGESGSVMVDAQKR
HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEEECHHC
KPIRKLELLSADGRQLAPEDIVTTSTAY
CCHHHHHHHCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MKRKSLAGNACPIARTLDLIGDWWSLLIIRDALEGISRFSDFEKSLEIAKNMLSTRLKGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VERDILRLVPASDGSAYKEYVLTEKGRALQTVIVALSQWGGEFMFEPGESGSVMVDAQKR
HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEEECHHC
KPIRKLELLSADGRQLAPEDIVTTSTAY
CCHHHHHHHCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]