Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

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The map label for this gene is ydfJ [H]

Identifier: 77459451

GI number: 77459451

Start: 3710729

End: 3713113

Strand: Reverse

Name: ydfJ [H]

Synonym: Pfl01_3229

Alternate gene names: 77459451

Gene position: 3713113-3710729 (Counterclockwise)

Preceding gene: 77459452

Following gene: 77459448

Centisome position: 57.67

GC content: 60.29

Gene sequence:

>2385_bases
ATGACTTCCTTGAGCACTCATCATCAGGACAAGGCGACGTTTCTCGAGCGCCTGATCTTCAACAACCGCCCGGCAGTGAT
CGTGATCTGCCTGCTGGTCAGCATTTTCCTGTTCTGGCAGGCCACGCTGATCCGTCCGTCCACCAGTTTCGAAAAGATGA
TCCCGCTCAAGCATCCGTTCATTGAAAAGATGATGGAGCACCGCAACGATCTGGCGAACCTGGGCAATACCGTACGCATT
TCGGTGGAAGCGAAGGATGGCGACATCTTCTCCAAGGAGTATATGGAGACCCTGCGTCAGATCAACGACGAGGTGTTCTA
CATCTCCGGCGTCGACCGTTCCGGCCTCAAGTCGCTGTGGAGCCCGAGCGTGCGCTGGACCGAAGTCACCGAGGAAGGTT
TTGCCGGCGGCGAAGTGATCCCGCAGAGCTACAACGGCTCCCAGGACAGCCTCGATCTGTTGCGCAACAACGTGCTCAAG
TCCGGTCAGGTCGGGCGTCTGGTGGCCAACGACTTCAAGTCGAGCATCGTCGACATCCCGCTGCTGGAGTCCTACCCGGA
CCCGCAGGACCAGGGCAAGCTGCTGGCGCTGGACTATCGCCAGTTCTCCCATGAGCTCGAAGACAAGATCCGCAACAAGT
TCGAAGCGCAGAACCCCAACGTCAAGATCCACATTGTCGGTTTCGCCAAGAAGGTCGGCGACCTGATCGACGGCCTGGTG
ATGGTGGTGATGTTCTTCGGCATCGCTTTCGTCATCACTCTGATCCTGCTGCTGTGGTTCACCAACTGCCTGCGCAGCAC
CGTGGCGGTGTTGAGCACCACGCTGGTGGCGGTGGTCTGGCAGTTGGGGTTAATGCACTTCTTCGGGTTCGGCCTCGATC
CGTATTCGATGCTTGTACCGTTCCTGATCTTCGCCATCGGCATTTCCCACGGCGTGCAGAAAATCAACGGGATCGCCCTG
CAATCCGGCGAGGCCGACAACGCCCTGACCGCCGCACGGCGGACCTTCCGTCAATTGTTCCTGCCGGGGATGATCGCGAT
TCTGGCGGACGCCGTCGGCTTCATCACGCTGCTGATCATCGACATCGGCGTGATCCGCGAGCTGGCCATCGGCGCTTCCA
TCGGCGTGGCGGTGATCGTGTTCACCAACCTGATCCTGCTGCCGGTGGCGATTTCCTATGTCGGCATCAGCAAGCGCGCC
ATCGCCAAGAGCAAGAAGGACGCGCACCGCGAACATCCGTTCTGGCGCCTGCTGTCGAACTTTGCCAACCCGAAAGTCGC
CCCGATCTCCATCGCCCTGGCGCTGGTCGCCTTCGGTGGCGGCCTCTGGTACAGCCAGAACCTGAAGATCGGCGACCTCG
ACCAGGGCGCGCCGGAACTGCGTCCGGACTCGCGCTACAACAAGGACAACAACTTCATCATCAGCAACTACTCGACCAGC
TCCGACGTGCTGGTGGTGATGGTCAAGACCAAGTCCGAAGGCTGCTCGCGCTATGAAGCCATGGCGCCGATCGATGAGCT
GATGTGGAAGATGCAGAACACCGAGGGCGTGCAGTCGGCGATCTCGCTGGTGACCGTGTCCAAGCAGATGATCAAGGGCA
TGAACGAGGGCAACCTGAAATGGGAAACCCTGTCGCGCAACCCGGACGTGCTGAACAACTCCATCGCCCGGGCCGACGGC
CTGTACAACAACAGTTGCTCGCTGGCGCCGGTGCTGGTGTTCCTCAACGACCACAAGGCTGAAACCCTCGACCGCGCAGT
GCATGCGGTGCAGGACTTCGCCAAGGAAAACAACAAGGAAGGCCTGGAATTCATCCTCGCCGCCGGTAACGCCGGGATCG
AGGCGGCTACCAACGAGGTGATCAAGAAGTCCGAGCTGACCATCCTGATCCTGGTGTACATCTGCGTGGCGGTCATGTGC
ATGATCACCTTCCGCTCGTGGGCGGCGACCCTGTGCATCGTGCTGCCGCTGGTGCTGACCTCGGTGCTGGGCAACGCGCT
GATGGCGTTCATGGGCATCGGCGTGAAGGTGGCGACGCTGCCGGTGGTGGCGCTGGGCGTGGGGATCGGCGTGGACTACG
GCATCTACATCTACAGCCGCCTGGAAAGTTTCCTGCGTGCCGGCCTGCCGTTGCAGGAAGCCTATTACCAGACCCTCAAA
TCCACCGGTAAAGCGGTGCTGTTCACCGGTCTGTGCCTGGCCATCGGCGTGTGCACCTGGATCTTCTCGGCGATCAAGTT
CCAGGCCGACATGGGCCTGATGCTGACCTTCATGCTGCTGTGGAACATGTTCGGTGCGCTGTGGCTGCTGCCGGCACTGG
CGAAGTTCCTGATCAAGCCGGAGAAACTGGCGGGGCAGAAGGGCAATTCGTTGTTTGCTCACTGA

Upstream 100 bases:

>100_bases
GGCAATCTGATCCTGAGCGGGCAGGGTGGCGTCCGGGTCACTTCGCCGAACGGCGCCGAGCTGGGCAAATGAGCCGAATC
AATAATAAGAAGGCGGGGCT

Downstream 100 bases:

>100_bases
TCCGGTTGGCTGAAATGAAAAAGCCGCAACCTTGAAGGGTTGCGGCTTTTTTATGGTGCAAGATCAAAAGCCCCTCACCC
TAGCCCTCTCCCAAAGGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 794; Mature: 793

Protein sequence:

>794_residues
MTSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRI
SVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLK
SGQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV
MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVPFLIFAIGISHGVQKINGIAL
QSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRA
IAKSKKDAHREHPFWRLLSNFANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS
SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWETLSRNPDVLNNSIARADG
LYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKEGLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMC
MITFRSWAATLCIVLPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK
STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKPEKLAGQKGNSLFAH

Sequences:

>Translated_794_residues
MTSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRI
SVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLK
SGQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV
MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVPFLIFAIGISHGVQKINGIAL
QSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRA
IAKSKKDAHREHPFWRLLSNFANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS
SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWETLSRNPDVLNNSIARADG
LYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKEGLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMC
MITFRSWAATLCIVLPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK
STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKPEKLAGQKGNSLFAH
>Mature_793_residues
TSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRIS
VEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLKS
GQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLVM
VVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVPFLIFAIGISHGVQKINGIALQ
SGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAI
AKSKKDAHREHPFWRLLSNFANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTSS
DVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWETLSRNPDVLNNSIARADGL
YNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKEGLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMCM
ITFRSWAATLCIVLPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLKS
TGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKPEKLAGQKGNSLFAH

Specific function: Unknown

COG id: COG1033

COG function: function code R; Predicted exporters of the RND superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mmpL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004869
- InterPro:   IPR000731 [H]

Pfam domain/function: PF03176 MMPL [H]

EC number: NA

Molecular weight: Translated: 87586; Mature: 87455

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPF
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHH
IEKMMEHRNDLANLGNTVRISVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLW
HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC
SPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLKSGQVGRLVANDFKSSIVDIP
CCCCEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
LLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV
HHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHH
MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FLIFAIGISHGVQKINGIALQSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLII
HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAIAKSKKDAHREHPFWRLLSN
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
FANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS
HCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLK
CCEEEEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
WETLSRNPDVLNNSIARADGLYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKE
EEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
GLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMCMITFRSWAATLCIVLPLVLT
CCEEEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKP
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EKLAGQKGNSLFAH
HHHCCCCCCCCCCC
>Mature Secondary Structure 
TSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPF
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHH
IEKMMEHRNDLANLGNTVRISVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLW
HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC
SPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLKSGQVGRLVANDFKSSIVDIP
CCCCEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
LLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV
HHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHH
MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FLIFAIGISHGVQKINGIALQSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLII
HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAIAKSKKDAHREHPFWRLLSN
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
FANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS
HCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLK
CCEEEEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
WETLSRNPDVLNNSIARADGLYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKE
EEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
GLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMCMITFRSWAATLCIVLPLVLT
CCEEEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKP
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EKLAGQKGNSLFAH
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]