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The map label for this gene is 77459452

Identifier: 77459452

GI number: 77459452

Start: 3713142

End: 3714170

Strand: Reverse

Name: 77459452

Synonym: Pfl01_3230

Alternate gene names: NA

Gene position: 3714170-3713142 (Counterclockwise)

Preceding gene: 77459460

Following gene: 77459451

Centisome position: 57.69

GC content: 64.72

Gene sequence:

>1029_bases
ATGAGTCGTTGCCGCCCGCCGGCGTTACGCAACACCGCGTTGCTGGCCACAGCACTCTCTCTGCTGGGCTTTGCCACATT
GTCGGCGCCGGTTCTCGCCGCCGAAGCGCCCGCCGACGTGGTCTATGCCACCGAATCGGCCAAGGCCTCGAAAAGCCTGA
TGCTCGATGTCGTTCACGCCGGAACCCGGCTGGTGGCGGTCGGGGATCGCGGGCACATTCTCTATTCCGACGATCAGGGC
AAGACCTGGACCCAGGCGAAAGTGCCGAGCCGCCAGTTGCTGACCGCCGTGTACTTCGTCGATGACAAGCACGGCTGGGC
CGTCGGCCACGACGCGCAGATCCTCGCCAGCGCAGACGGCGGCCTGACCTGGACCAAACAGTTCGAAGACCTCAAGCGCG
AATCGCCGTTGCTCGACGTCTGGTTCAAGGACGTCAACAGTGGCCTCGCCGTGGGTGCCTACGGCGCGCTGCTGGAAACC
ACCGACGGCGGCAAAAACTGGGAAGACGTCAGCGATCGCCTCGACAACGAAGACCAGTTCCACCTCAACGCCATCGCTTC
GGTAAAAGACGCCGGCCTGTTCATCGTCGGTGAGTCGGGCAGCATGTTCCGCTCCGCCGACTGGGGCCAGACCTGGGAAA
AACTCGAAGGCCCGTACGAAGGCTCGCTGTTCGGCGTGATCGGCACGGCGCAACCGCAAACCCTGCTGGCTTACGGTCTG
CGCGGCAATCTTTACCGCTCCACCGATTTCGGCAGCACGTGGGAGCAGGTCGAGCTGAAAGCCGCGCGCGGTTCGCTGGA
GTTCGGCCTGTCCGGCGCCACGCTGCTCGAGGATGGCTCCATCGTCATCGTCGGCAACGGCGGCTCGGTGGTCAGCAGCA
GTGACAACGGCGAAACCTTCAGCGTGTTCAACCGTCCGGATCGCATCTCGCTGTCGTCGGTCACCGCCGCCGGCAACGGC
AATCTGATCCTGAGCGGGCAGGGTGGCGTCCGGGTCACTTCGCCGAACGGCGCCGAGCTGGGCAAATGA

Upstream 100 bases:

>100_bases
AGCGGGTTTCAGGACTATGCTTGTGACCAGGCAGTCACCGTGAGCACCCTTGCGGCGCCCTTAAGGTCCATGACCAACAA
TAATAAACAGGGGAAGGTCT

Downstream 100 bases:

>100_bases
GCCGAATCAATAATAAGAAGGCGGGGCTATGACTTCCTTGAGCACTCATCATCAGGACAAGGCGACGTTTCTCGAGCGCC
TGATCTTCAACAACCGCCCG

Product: BNR repeat-containing glycosyl hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSRCRPPALRNTALLATALSLLGFATLSAPVLAAEAPADVVYATESAKASKSLMLDVVHAGTRLVAVGDRGHILYSDDQG
KTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILASADGGLTWTKQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLET
TDGGKNWEDVSDRLDNEDQFHLNAIASVKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGVIGTAQPQTLLAYGL
RGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLEDGSIVIVGNGGSVVSSSDNGETFSVFNRPDRISLSSVTAAGNG
NLILSGQGGVRVTSPNGAELGK

Sequences:

>Translated_342_residues
MSRCRPPALRNTALLATALSLLGFATLSAPVLAAEAPADVVYATESAKASKSLMLDVVHAGTRLVAVGDRGHILYSDDQG
KTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILASADGGLTWTKQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLET
TDGGKNWEDVSDRLDNEDQFHLNAIASVKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGVIGTAQPQTLLAYGL
RGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLEDGSIVIVGNGGSVVSSSDNGETFSVFNRPDRISLSSVTAAGNG
NLILSGQGGVRVTSPNGAELGK
>Mature_341_residues
SRCRPPALRNTALLATALSLLGFATLSAPVLAAEAPADVVYATESAKASKSLMLDVVHAGTRLVAVGDRGHILYSDDQGK
TWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILASADGGLTWTKQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLETT
DGGKNWEDVSDRLDNEDQFHLNAIASVKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGVIGTAQPQTLLAYGLR
GNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLEDGSIVIVGNGGSVVSSSDNGETFSVFNRPDRISLSSVTAAGNGN
LILSGQGGVRVTSPNGAELGK

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 36172; Mature: 36040

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRCRPPALRNTALLATALSLLGFATLSAPVLAAEAPADVVYATESAKASKSLMLDVVHA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCHHHHEEEEECC
GTRLVAVGDRGHILYSDDQGKTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILASADG
CCEEEEECCCCCEEEECCCCCEEEECCCCHHHEEEEEEEEECCCCEEECCCCEEEEECCC
GLTWTKQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLETTDGGKNWEDVSDRLDNEDQF
CCEEHHHHHHHHHCCCEEEEEHHHHCCCEEEEECCEEEEECCCCCCHHHHHHHCCCCCCE
HLNAIASVKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGVIGTAQPQTLLAYGL
EEEEEEEECCCCEEEECCCCCCEECCCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEECC
RGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLEDGSIVIVGNGGSVVSSSDNGETF
CCCEEECCCCCCCHHHEEEEECCCCEEECCCCCEEEECCCEEEEECCCCEEECCCCCCEE
SVFNRPDRISLSSVTAAGNGNLILSGQGGVRVTSPNGAELGK
EEECCCCCEEEEEEEECCCCCEEEECCCCEEEECCCCCCCCC
>Mature Secondary Structure 
SRCRPPALRNTALLATALSLLGFATLSAPVLAAEAPADVVYATESAKASKSLMLDVVHA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCHHHHEEEEECC
GTRLVAVGDRGHILYSDDQGKTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILASADG
CCEEEEECCCCCEEEECCCCCEEEECCCCHHHEEEEEEEEECCCCEEECCCCEEEEECCC
GLTWTKQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLETTDGGKNWEDVSDRLDNEDQF
CCEEHHHHHHHHHCCCEEEEEHHHHCCCEEEEECCEEEEECCCCCCHHHHHHHCCCCCCE
HLNAIASVKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGVIGTAQPQTLLAYGL
EEEEEEEECCCCEEEECCCCCCEECCCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEECC
RGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLEDGSIVIVGNGGSVVSSSDNGETF
CCCEEECCCCCCCHHHEEEEECCCCEEECCCCCEEEECCCEEEEECCCCEEECCCCCCEE
SVFNRPDRISLSSVTAAGNGNLILSGQGGVRVTSPNGAELGK
EEECCCCCEEEEEEEECCCCCEEEECCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]