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The map label for this gene is yagI [H]

Identifier: 77459309

GI number: 77459309

Start: 3537000

End: 3537764

Strand: Reverse

Name: yagI [H]

Synonym: Pfl01_3087

Alternate gene names: 77459309

Gene position: 3537764-3537000 (Counterclockwise)

Preceding gene: 77459310

Following gene: 77459308

Centisome position: 54.95

GC content: 60.92

Gene sequence:

>765_bases
ATGACCGAAGACACCATCAAGCGCCGGGCACGCGGTCTGGACCGGGCGTTCGATATCCTCGATTTCCTCAAGGAAATCGG
CCAGCCACTGCGCCCGAACGATATCGCCAACGGTATCGGCAGCCCGAAATCCACGGTCTACGAACTGGTGGCGTCATTGC
TCGAACGTCGGATTCTGGAGCCGGTGGGCAAGGACGGTCACGTCTATCTCGGTCGTCAGCTGTACTTCCTCGGCCAGGCG
CACTTGCGGCATTTCGACCTCAGTCGCGAGGCCGATCACGCCTTGCAGGAGATCGTCAGCCAGACCCGGGAAACCGCGCA
GATGTGCCTGCTCAACGGGCGCAAATACACGGTGGCGCTGATGAAGGAGGGCGAGCGGCATTTCCGCATTTCTTCCGATA
TCGGCGAAAACGCGCCGATCCCGTGGACCGCCTCGGGACGCCTGCTGCTGGCGCACTTGAGTGACCAGCAGATAAGCGAC
TTGATCGACCCCGACGACTTCATCCTGCCGGATGGCGAACGTCTGCCGATGGAGACGTTTCTGGCGGAAATCCGTCAGGC
CGGCATCGACGGTTTCTTCTCCTTCGACAGTGTCGCCGACACCTTTACCCACTGCTTCGCCGCCCCGGTGAAAGACCCTC
AAGGCGTTGCCATCTGCACCCTGTGCATCGTCGCCCCGCGTGCCGATGCCAAGAACAATTACAACGACTATCGCCGGGTC
TTGATCGAGAGCGCCAACAGCCTCGCCCGGCGAATCAACGAATAA

Upstream 100 bases:

>100_bases
GTCCGACGTTTCGGGAGGGCGGGGGGTGAGGGCTGCGATCCAACTGACACAACGCCAAGGGGCAGTTACCATCCCGGCAT
CTTTCAAGGGAACCACAGAA

Downstream 100 bases:

>100_bases
CCGCGCCTGCCTGCGGGCGCGACTGTGAGGAGTTCGACCATGACGACTGCCAACAACACTGCTGCCGTGGAAAAGGGCGA
TGCTGCCCTCGGCGCGCAAC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTEDTIKRRARGLDRAFDILDFLKEIGQPLRPNDIANGIGSPKSTVYELVASLLERRILEPVGKDGHVYLGRQLYFLGQA
HLRHFDLSREADHALQEIVSQTRETAQMCLLNGRKYTVALMKEGERHFRISSDIGENAPIPWTASGRLLLAHLSDQQISD
LIDPDDFILPDGERLPMETFLAEIRQAGIDGFFSFDSVADTFTHCFAAPVKDPQGVAICTLCIVAPRADAKNNYNDYRRV
LIESANSLARRINE

Sequences:

>Translated_254_residues
MTEDTIKRRARGLDRAFDILDFLKEIGQPLRPNDIANGIGSPKSTVYELVASLLERRILEPVGKDGHVYLGRQLYFLGQA
HLRHFDLSREADHALQEIVSQTRETAQMCLLNGRKYTVALMKEGERHFRISSDIGENAPIPWTASGRLLLAHLSDQQISD
LIDPDDFILPDGERLPMETFLAEIRQAGIDGFFSFDSVADTFTHCFAAPVKDPQGVAICTLCIVAPRADAKNNYNDYRRV
LIESANSLARRINE
>Mature_253_residues
TEDTIKRRARGLDRAFDILDFLKEIGQPLRPNDIANGIGSPKSTVYELVASLLERRILEPVGKDGHVYLGRQLYFLGQAH
LRHFDLSREADHALQEIVSQTRETAQMCLLNGRKYTVALMKEGERHFRISSDIGENAPIPWTASGRLLLAHLSDQQISDL
IDPDDFILPDGERLPMETFLAEIRQAGIDGFFSFDSVADTFTHCFAAPVKDPQGVAICTLCIVAPRADAKNNYNDYRRVL
IESANSLARRINE

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=250, Percent_Identity=24.8, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082359, Length=156, Percent_Identity=22.4358974358974, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28553; Mature: 28422

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDTIKRRARGLDRAFDILDFLKEIGQPLRPNDIANGIGSPKSTVYELVASLLERRILE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
PVGKDGHVYLGRQLYFLGQAHLRHFDLSREADHALQEIVSQTRETAQMCLLNGRKYTVAL
HCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
MKEGERHFRISSDIGENAPIPWTASGRLLLAHLSDQQISDLIDPDDFILPDGERLPMETF
ECCCCHHEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCHHHH
LAEIRQAGIDGFFSFDSVADTFTHCFAAPVKDPQGVAICTLCIVAPRADAKNNYNDYRRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
LIESANSLARRINE
HHHHHHHHHHHHCC
>Mature Secondary Structure 
TEDTIKRRARGLDRAFDILDFLKEIGQPLRPNDIANGIGSPKSTVYELVASLLERRILE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
PVGKDGHVYLGRQLYFLGQAHLRHFDLSREADHALQEIVSQTRETAQMCLLNGRKYTVAL
HCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
MKEGERHFRISSDIGENAPIPWTASGRLLLAHLSDQQISDLIDPDDFILPDGERLPMETF
ECCCCHHEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCHHHH
LAEIRQAGIDGFFSFDSVADTFTHCFAAPVKDPQGVAICTLCIVAPRADAKNNYNDYRRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
LIESANSLARRINE
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]