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The map label for this gene is yjgF [C]

Identifier: 77459310

GI number: 77459310

Start: 3538007

End: 3538396

Strand: Reverse

Name: yjgF [C]

Synonym: Pfl01_3088

Alternate gene names: 77459310

Gene position: 3538396-3538007 (Counterclockwise)

Preceding gene: 77459311

Following gene: 77459309

Centisome position: 54.96

GC content: 61.28

Gene sequence:

>390_bases
ATGAGCATTACTCGTTACGGCACCGGCAGCACCGCCGCTGGCGGCCAGCCTCGTCCATTCGCCCGCGCCGTTGAAGCCGA
TGGCTGGCTGCACGTTTCCGGGCAGGTGCCGGCGGTGGATGGCGAGATCATCGTGGGCGGCATCGTCGAGCAGACGCACC
AGACCATGAAGAACCTGATCGCGATTCTCGAAGAGGCCGGTTATGGCCTGGAAGATGTAGTGCGCGCCGGCGTGTGGCTG
GACGATCCGCGGGATTTCAGCAGTTTCAACAAGGTCTTCGGCGAATACTTCAAGCCTGAACACGCACCGGCCCGAGCCTG
CGTACAGGCGAGCATGATGGTCGACTGCAAGGTCGAGATCGACTGCATTGCGTACAAGAAGAAGGCTTGA

Upstream 100 bases:

>100_bases
CCCAAGGAACTGTTCGAGCGTCCGCAATCGCCGCGGCTGGCGGAATTTCTCAAAAGCACGCGGTTCTGACTTTTCACTTT
TTCAATCAGGAGAAATACCC

Downstream 100 bases:

>100_bases
GAGGTGTGGCGTTGCTGAGCCCATAGCCCCCTCACCCTGGCCCTCTCCCCCAGGAGAGGGGACTGATTTCCATCGATGCA
GATTGTTGTGTCAGACGACG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSITRYGTGSTAAGGQPRPFARAVEADGWLHVSGQVPAVDGEIIVGGIVEQTHQTMKNLIAILEEAGYGLEDVVRAGVWL
DDPRDFSSFNKVFGEYFKPEHAPARACVQASMMVDCKVEIDCIAYKKKA

Sequences:

>Translated_129_residues
MSITRYGTGSTAAGGQPRPFARAVEADGWLHVSGQVPAVDGEIIVGGIVEQTHQTMKNLIAILEEAGYGLEDVVRAGVWL
DDPRDFSSFNKVFGEYFKPEHAPARACVQASMMVDCKVEIDCIAYKKKA
>Mature_128_residues
SITRYGTGSTAAGGQPRPFARAVEADGWLHVSGQVPAVDGEIIVGGIVEQTHQTMKNLIAILEEAGYGLEDVVRAGVWLD
DPRDFSSFNKVFGEYFKPEHAPARACVQASMMVDCKVEIDCIAYKKKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=129, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87082396, Length=132, Percent_Identity=32.5757575757576, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=31.858407079646, Blast_Score=64, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=37.6, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=37.6, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=37.6, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322138, Length=111, Percent_Identity=34.2342342342342, Blast_Score=81, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=30.188679245283, Blast_Score=68, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=37.5, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13989; Mature: 13858

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITRYGTGSTAAGGQPRPFARAVEADGWLHVSGQVPAVDGEIIVGGIVEQTHQTMKNLI
CCEECCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHHHH
AILEEAGYGLEDVVRAGVWLDDPRDFSSFNKVFGEYFKPEHAPARACVQASMMVDCKVEI
HHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEEEEEE
DCIAYKKKA
EEEEEECCC
>Mature Secondary Structure 
SITRYGTGSTAAGGQPRPFARAVEADGWLHVSGQVPAVDGEIIVGGIVEQTHQTMKNLI
CEECCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHHHH
AILEEAGYGLEDVVRAGVWLDDPRDFSSFNKVFGEYFKPEHAPARACVQASMMVDCKVEI
HHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEEEEEE
DCIAYKKKA
EEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]