Click here to switch to the map view.

The map label for this gene is ycdO [H]

Identifier: 77459100

GI number: 77459100

Start: 3316831

End: 3317655

Strand: Direct

Name: ycdO [H]

Synonym: Pfl01_2875

Alternate gene names: 77459100

Gene position: 3316831-3317655 (Clockwise)

Preceding gene: 77459099

Following gene: 77459102

Centisome position: 51.52

GC content: 59.03

Gene sequence:

>825_bases
ATGAAAAAGACGCCACTCGCGTTATTGCTGACCCTTGGTTTGCTCAACACCCCGCTGTCGGCATTCGCCGCGACCGCGCC
ACTGGATCTGGTGGGGCCGGTGTCGGACTACAAGATTTACGTCACCGAACAACTGAATGAATTGGCCAGCCATACCCAGC
AGTTCACCGACGCGGTGAAAAAAGGCGACCTGGCCACCGCGCAAAAGCTCTACGCGCCAACCCGCGTTTTTTATGAGTCG
ATCGAGCCGATCGCCGAGCTGTTCAGTGACCTCGACGCGTCCATCGACTCCCGCGTTGACGACCACGAGCAAGGCGTGAA
AGCCGAAGACTTCACCGGTTTCCACCGCATCGAATACTCGCTGTTCTCGGAAAAAAGCACCAAGGACCTCGACGCCCTGG
CCGATGGCCTGAACAAGGACGTGAAAGACCTGCAGACCCGCGTCGCCGGCCTGACCTTCCCGCCGGAAAAAGTCGTCGGC
GGCGCCGCTGCGCTGCTCGAAGAAGTCGCCGCGACCAAGATCTCCGGTGAAGAGGACCGTTACAGCCACACCGACCTGTA
CGACTTCCAGGGCAACATCGACGGCGCGAAGAAAATCGTCGACCTGTTCCGTCCGCAGATCGAGAAACAGGACAAGGCCT
TCGTCGCCAAAGTCGACAAGAACTTCGCCACCGTGGACAAGATCCTGGCCAAGTACAAGACCAAGGACGGTGGTTTCGAG
ACTTACGACAAGGTGAAGGACAACGACCGCAAAGCGCTGGTCGGCCCGGTCAATACCCTGGCGGAAGACCTGTCGACACT
GCGTGGCAAGCTCGGTCTGAACTGA

Upstream 100 bases:

>100_bases
CCTGCCGGGTGTCACGGGCGACAAGGACTTCATCGGTCGCTCGCTGCTCAACGCTACTCAACCAAAAACAACTGCATAGC
ATTCAACAGGAGCCGCCCCC

Downstream 100 bases:

>100_bases
GTTCGCGCATAAAAAAATCCCCCGGACGCGTCCTGCGTTCGGGGGATTTTTTGTGGGCCGGTTTTAAAGAATGCGATAGA
GCAACCGCTCGACCCGCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKKTPLALLLTLGLLNTPLSAFAATAPLDLVGPVSDYKIYVTEQLNELASHTQQFTDAVKKGDLATAQKLYAPTRVFYES
IEPIAELFSDLDASIDSRVDDHEQGVKAEDFTGFHRIEYSLFSEKSTKDLDALADGLNKDVKDLQTRVAGLTFPPEKVVG
GAAALLEEVAATKISGEEDRYSHTDLYDFQGNIDGAKKIVDLFRPQIEKQDKAFVAKVDKNFATVDKILAKYKTKDGGFE
TYDKVKDNDRKALVGPVNTLAEDLSTLRGKLGLN

Sequences:

>Translated_274_residues
MKKTPLALLLTLGLLNTPLSAFAATAPLDLVGPVSDYKIYVTEQLNELASHTQQFTDAVKKGDLATAQKLYAPTRVFYES
IEPIAELFSDLDASIDSRVDDHEQGVKAEDFTGFHRIEYSLFSEKSTKDLDALADGLNKDVKDLQTRVAGLTFPPEKVVG
GAAALLEEVAATKISGEEDRYSHTDLYDFQGNIDGAKKIVDLFRPQIEKQDKAFVAKVDKNFATVDKILAKYKTKDGGFE
TYDKVKDNDRKALVGPVNTLAEDLSTLRGKLGLN
>Mature_274_residues
MKKTPLALLLTLGLLNTPLSAFAATAPLDLVGPVSDYKIYVTEQLNELASHTQQFTDAVKKGDLATAQKLYAPTRVFYES
IEPIAELFSDLDASIDSRVDDHEQGVKAEDFTGFHRIEYSLFSEKSTKDLDALADGLNKDVKDLQTRVAGLTFPPEKVVG
GAAALLEEVAATKISGEEDRYSHTDLYDFQGNIDGAKKIVDLFRPQIEKQDKAFVAKVDKNFATVDKILAKYKTKDGGFE
TYDKVKDNDRKALVGPVNTLAEDLSTLRGKLGLN

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=276, Percent_Identity=57.2463768115942, Blast_Score=309, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 30108; Mature: 30108

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTPLALLLTLGLLNTPLSAFAATAPLDLVGPVSDYKIYVTEQLNELASHTQQFTDAVK
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
KGDLATAQKLYAPTRVFYESIEPIAELFSDLDASIDSRVDDHEQGVKAEDFTGFHRIEYS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHCCCHHHHHHH
LFSEKSTKDLDALADGLNKDVKDLQTRVAGLTFPPEKVVGGAAALLEEVAATKISGEEDR
HHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
YSHTDLYDFQGNIDGAKKIVDLFRPQIEKQDKAFVAKVDKNFATVDKILAKYKTKDGGFE
CCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCH
TYDKVKDNDRKALVGPVNTLAEDLSTLRGKLGLN
HHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKTPLALLLTLGLLNTPLSAFAATAPLDLVGPVSDYKIYVTEQLNELASHTQQFTDAVK
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
KGDLATAQKLYAPTRVFYESIEPIAELFSDLDASIDSRVDDHEQGVKAEDFTGFHRIEYS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHCCCHHHHHHH
LFSEKSTKDLDALADGLNKDVKDLQTRVAGLTFPPEKVVGGAAALLEEVAATKISGEEDR
HHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
YSHTDLYDFQGNIDGAKKIVDLFRPQIEKQDKAFVAKVDKNFATVDKILAKYKTKDGGFE
CCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCH
TYDKVKDNDRKALVGPVNTLAEDLSTLRGKLGLN
HHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA